UBTF

Available structures

Ortholog search: PDBe RCSB

List of PDB id codes
1K99, 1L8Y, 1L8Z, 2HDZ

Identifiers

Aliases

UBTF, NOR-90, UBF, UBF-1, UBF1, UBF2, upstream binding transcription factor, RNA polymerase I

External IDs

MGI: 98512 HomoloGene: 7970 GeneCards: UBTF

Gene location (Human)

Chr.	Chromosome 17 (human)^[1]

Band	No data available	Start	44,205,033 bp^[1]
Band	No data available	End	44,221,626 bp^[1]

Gene location (Mouse)

Chr.	Chromosome 11 (mouse)^[2]

Band	No data available	Start	102,304,560 bp^[2]
Band	No data available	End	102,319,742 bp^[2]

RNA expression pattern

More reference expression data

Gene ontology
Molecular function	• DNA binding • RNA polymerase I CORE element sequence-specific DNA binding • RNA polymerase I upstream control element sequence-specific DNA binding • protein binding • chromatin binding • RNA binding
Cellular component	• nucleolus • nucleus • nucleoplasm • fibrillar center
Biological process	• transcription initiation from RNA polymerase I promoter • transcription from RNA polymerase I promoter • termination of RNA polymerase I transcription • positive regulation of transcription from RNA polymerase I promoter • transcription elongation from RNA polymerase I promoter • regulation of glucose mediated signaling pathway • regulation of transcription, DNA-templated • transcription, DNA-templated • regulation of transcription from RNA polymerase I promoter
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


7343


21429

Ensembl


ENSG00000108312


ENSMUSG00000020923

UniProt


P17480


P25976

RefSeq (mRNA)


NM_001076683 NM_001076684 NM_014233


NM_001044383 NM_011551 NM_001302954 NM_001302955

RefSeq (protein)


NP_001070151 NP_001070152 NP_055048


n/a

Location (UCSC)

Chr 17: 44.21 – 44.22 Mb

Chr 17: 102.3 – 102.32 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Nucleolar transcription factor 1 is a protein that in humans is encoded by the UBTF gene.^[5]^[6]

Function

Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and three TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes (Jantzen et al., 1990).[supplied by OMIM]^[6]

Interactions

UBTF has been shown to interact with:

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000108312 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000020923 - Ensembl, May 2017
↑ "Human PubMed Reference:".
↑ "Mouse PubMed Reference:".
↑ Matera AG, Wu W, Imai H, O'Keefe CL, Chan EK (May 1997). "Molecular cloning of the RNA polymerase I transcription factor hUBF/NOR-90 (UBTF) gene and localization to 17q21.3 by fluorescence in situ hybridization and radiation hybrid mapping". Genomics. 41 (1): 135–8. PMID 9126496. doi:10.1006/geno.1997.4647.
1 2 "Entrez Gene: UBTF upstream binding transcription factor, RNA polymerase I".
↑ Voit R, Kuhn A, Sander EE, Grummt I (July 1995). "Activation of mammalian ribosomal gene transcription requires phosphorylation of the nucleolar transcription factor UBF". Nucleic Acids Res. 23 (14): 2593–9. PMC 307079 . PMID 7651819. doi:10.1093/nar/23.14.2593.
↑ Hannan KM, Hannan RD, Smith SD, Jefferson LS, Lun M, Rothblum LI (October 2000). "Rb and p130 regulate RNA polymerase I transcription: Rb disrupts the interaction between UBF and SL-1". Oncogene. 19 (43): 4988–99. PMID 11042686. doi:10.1038/sj.onc.1203875.
↑ Voit R, Grummt I (November 2001). "Phosphorylation of UBF at serine 388 is required for interaction with RNA polymerase I and activation of rDNA transcription". Proc. Natl. Acad. Sci. U.S.A. 98 (24): 13631–6. PMC 61092 . PMID 11698641. doi:10.1073/pnas.231071698.
↑ Zhai W, Comai L (August 2000). "Repression of RNA polymerase I transcription by the tumor suppressor p53". Mol. Cell. Biol. 20 (16): 5930–8. PMC 86070 . PMID 10913176. doi:10.1128/mcb.20.16.5930-5938.2000.
↑ Lin CY, Tuan J, Scalia P, Bui T, Comai L (Dec 2002). "The cell cycle regulatory factor TAF1 stimulates ribosomal DNA transcription by binding to the activator UBF". Curr. Biol. 12 (24): 2142–6. PMID 12498690. doi:10.1016/s0960-9822(02)01389-1.

Chan EK, Imai H, Hamel JC, Tan EM (1991). "Human autoantibody to RNA polymerase I transcription factor hUBF. Molecular identity of nucleolus organizer region autoantigen NOR-90 and ribosomal RNA transcription upstream binding factor". J. Exp. Med. 174 (5): 1239–44. PMC 2119007 . PMID 1940801. doi:10.1084/jem.174.5.1239.
Jantzen HM, Admon A, Bell SP, Tjian R (1990). "Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins". Nature. 344 (6269): 830–6. PMID 2330041. doi:10.1038/344830a0.
Bell SP, Learned RM, Jantzen HM, Tjian R (1988). "Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis". Science. 241 (4870): 1192–7. PMID 3413483. doi:10.1126/science.3413483.
Voit R, Kuhn A, Sander EE, Grummt I (1995). "Activation of mammalian ribosomal gene transcription requires phosphorylation of the nucleolar transcription factor UBF". Nucleic Acids Res. 23 (14): 2593–9. PMC 307079 . PMID 7651819. doi:10.1093/nar/23.14.2593.
Hempel WM, Cavanaugh AH, Hannan RD, Taylor L, Rothblum LI (1996). "The species-specific RNA polymerase I transcription factor SL-1 binds to upstream binding factor". Mol. Cell. Biol. 16 (2): 557–63. PMC 231034 . PMID 8552083. doi:10.1128/MCB.16.2.557.
Hanada K, Song CZ, Yamamoto K, Yano K, Maeda Y, Yamaguchi K, Muramatsu M (1996). "RNA polymerase I associated factor 53 binds to the nucleolar transcription factor UBF and functions in specific rDNA transcription". EMBO J. 15 (9): 2217–26. PMC 450146 . PMID 8641287.
Pluta AF, Earnshaw WC (1996). "Specific interaction between human kinetochore protein CENP-C and a nucleolar transcriptional regulator". J. Biol. Chem. 271 (31): 18767–74. PMID 8702533. doi:10.1074/jbc.271.31.18767.
Whitehead CM, Winkfein RJ, Fritzler MJ, Rattner JB (1997). "ASE-1: a novel protein of the fibrillar centres of the nucleolus and nucleolus organizer region of mitotic chromosomes". Chromosoma. 106 (8): 493–502. PMID 9426281. doi:10.1007/s004120050271.
Voit R, Hoffmann M, Grummt I (1999). "Phosphorylation by G1-specific cdk-cyclin complexes activates the nucleolar transcription factor UBF". EMBO J. 18 (7): 1891–9. PMC 1171274 . PMID 10202152. doi:10.1093/emboj/18.7.1891.
Liu CJ, Wang H, Lengyel P (1999). "The interferon-inducible nucleolar p204 protein binds the ribosomal RNA-specific UBF1 transcription factor and inhibits ribosomal RNA transcription". EMBO J. 18 (10): 2845–54. PMC 1171365 . PMID 10329630. doi:10.1093/emboj/18.10.2845.
Hannan KM, Hannan RD, Smith SD, Jefferson LS, Lun M, Rothblum LI (2000). "Rb and p130 regulate RNA polymerase I transcription: Rb disrupts the interaction between UBF and SL-1". Oncogene. 19 (43): 4988–99. PMID 11042686. doi:10.1038/sj.onc.1203875.
Kalousek I, Krízková P (2000). "Lymphocyte mitogenic transformation is accompanied by phosphorylation of the nucleolar transcription factor UBF". Cell. Mol. Biol. (Noisy-le-grand). 46 (7): 1163–71. PMID 11075946.
Pelletier G, Stefanovsky VY, Faubladier M, Hirschler-Laszkiewicz I, Savard J, Rothblum LI, Côté J, Moss T (2000). "Competitive recruitment of CBP and Rb-HDAC regulates UBF acetylation and ribosomal transcription". Mol. Cell. 6 (5): 1059–66. PMID 11106745. doi:10.1016/S1097-2765(00)00104-0.
Miller G, Panov KI, Friedrich JK, Trinkle-Mulcahy L, Lamond AI, Zomerdijk JC (2001). "hRRN3 is essential in the SL1-mediated recruitment of RNA Polymerase I to rRNA gene promoters". EMBO J. 20 (6): 1373–82. PMC 145519 . PMID 11250903. doi:10.1093/emboj/20.6.1373.
Seither P, Iben S, Thiry M, Grummt I (2001). "PAF67, a novel protein that is associated with the initiation-competent form of RNA polymerase I". Biol. Chem. 382 (8): 1163–70. PMID 11592397. doi:10.1515/BC.2001.146.
Voit R, Grummt I (2001). "Phosphorylation of UBF at serine 388 is required for interaction with RNA polymerase I and activation of rDNA transcription". Proc. Natl. Acad. Sci. U.S.A. 98 (24): 13631–6. PMC 61092 . PMID 11698641. doi:10.1073/pnas.231071698.
Stefanovsky VY, Pelletier G, Hannan R, Gagnon-Kugler T, Rothblum LI, Moss T (2001). "An immediate response of ribosomal transcription to growth factor stimulation in mammals is mediated by ERK phosphorylation of UBF". Mol. Cell. 8 (5): 1063–73. PMID 11741541. doi:10.1016/S1097-2765(01)00384-7.
Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI (2002). "Directed proteomic analysis of the human nucleolus". Curr. Biol. 12 (1): 1–11. PMID 11790298. doi:10.1016/S0960-9822(01)00650-9.
Dühr S, Torres-Montaner A, Astola A, García-Cozar FJ, Pendón C, Bolívar J, Valdivia MM (2001). "Molecular analysis of the 5' region of human ribosomal transcription factor UBF". DNA Seq. 12 (4): 267–72. PMID 11916260. doi:10.3109/10425170109025001.

PDB gallery

1k99: Solution Structure of the first HMG box in human Upstream binding factor

1l8y: Solution structure of HMG box 5 in human upstream binding factor

1l8z: Solution structure of HMG box 5 in human upstream binding factor

1v63: Solution structure of the 6th HMG box of mouse UBF1

1v64: Solution structure of the 3rd HMG box of mouse UBF1

1wgf: Solution structure of the 4th HMG-box of mouse UBF1

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UBTF

Function

Interactions

References

Further reading