TFAM

Available structures

Ortholog search: PDBe RCSB

List of PDB id codes
3FGH, 3TMM, 3TQ6, 4NNU, 4NOD

Identifiers

Aliases

TFAM, MTTF1, MTTFA, TCF6, TCF6L1, TCF6L2, TCF6L3, transcription factor A, mitochondrial, MTDPS15

External IDs

MGI: 107810 HomoloGene: 31139 GeneCards: TFAM

Gene location (Human)

Chr.	Chromosome 10 (human)^[1]

Band	No data available	Start	58,385,022 bp^[1]
Band	No data available	End	58,399,221 bp^[1]

Gene location (Mouse)

Chr.	Chromosome 10 (mouse)^[2]

Band	No data available	Start	71,225,464 bp^[2]
Band	No data available	End	71,238,280 bp^[2]

RNA expression pattern

More reference expression data

Gene ontology
Molecular function	• DNA binding • mitochondrial light strand promoter sense binding • heat shock protein binding • transcription factor activity, sequence-specific DNA binding • transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding • chromatin binding • RNA polymerase II core promoter proximal region sequence-specific DNA binding • protein binding • transcription coactivator binding • DNA binding, bending • RNA binding
Cellular component	• cytosol • mitochondrial matrix • mitochondrion • mitochondrial nucleoid • nucleus
Biological process	• DNA-dependent DNA replication • regulation of transcription, DNA-templated • regulation of transcription from RNA polymerase I promoter • transcription initiation from mitochondrial promoter • mitochondrion organization • transcription, DNA-templated • positive regulation of transcription, DNA-templated • mitochondrial respiratory chain complex assembly • positive regulation of transcription from RNA polymerase II promoter • transcription from RNA polymerase II promoter • transcription from mitochondrial promoter
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


7019


21780

Ensembl


ENSG00000108064


ENSMUSG00000003923

UniProt


Q00059


P40630

RefSeq (mRNA)


NM_001270782 NM_003201 NM_012251


NM_009360

RefSeq (protein)


NP_001257711 NP_003192


NP_033386

Location (UCSC)

Chr 10: 58.39 – 58.4 Mb

Chr 10: 71.23 – 71.24 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Mitochondrial transcription factor A, abbreviated as TFAM or mtTFA, is a protein that in humans is encoded by the TFAM gene.^[5]^[6]

Function

This gene encodes a mitochondrial transcription factor that is a key activator of mitochondrial transcription as well as a participant in mitochondrial genome replication. TFAM binds mitochondrial promoter DNA to aid transcription of the mitochondrial genome. Studies in mice have demonstrated that this gene product is required to regulate the mitochondrial genome copy number and is essential for embryonic development. A mouse model for Kearns-Sayre syndrome was produced when expression of this gene was eliminated by targeted disruption in heart and muscle cells.^[6] TFAM is a double box High-mobility group DNA-binding and bending protein.^[7]

Interactions

TFAM has been shown to interact with TFB1M.^[8]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000108064 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000003923 - Ensembl, May 2017
↑ "Human PubMed Reference:".
↑ "Mouse PubMed Reference:".
↑ Tiranti V, Rossi E, Ruiz-Carrillo A, Rossi G, Rocchi M, DiDonato S, Zuffardi O, Zeviani M (Jul 1995). "Chromosomal localization of mitochondrial transcription factor A (TCF6), single-stranded DNA-binding protein (SSBP), and endonuclease G (ENDOG), three human housekeeping genes involved in mitochondrial biogenesis". Genomics. 25 (2): 559–64. PMID 7789991. doi:10.1016/0888-7543(95)80058-T.
1 2 "Entrez Gene: TFAM transcription factor A, mitochondrial".
↑ Murugesapillai D, McCauley MJ, Maher LJ, Williams MC (15 November 2016). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. doi:10.1007/s12551-016-0236-4.
↑ McCulloch V, Shadel GS (Aug 2003). "Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity". Mol. Cell. Biol. 23 (16): 5816–24. PMC 166325 . PMID 12897151. doi:10.1128/MCB.23.16.5816-5824.2003.

Tominaga K, Akiyama S, Kagawa Y, Ohta S (1992). "Upstream region of a genomic gene for human mitochondrial transcription factor 1.". Biochim. Biophys. Acta. 1131 (2): 217–9. PMID 1610904. doi:10.1016/0167-4781(92)90082-b.
Fisher RP, Lisowsky T, Parisi MA, Clayton DA (1992). "DNA wrapping and bending by a mitochondrial high mobility group-like transcriptional activator protein.". J. Biol. Chem. 267 (5): 3358–67. PMID 1737790.
Parisi MA, Clayton DA (1991). "Similarity of human mitochondrial transcription factor 1 to high mobility group proteins.". Science. 252 (5008): 965–9. PMID 2035027. doi:10.1126/science.2035027.
Tominaga K, Hayashi J, Kagawa Y, Ohta S (1993). "Smaller isoform of human mitochondrial transcription factor 1: its wide distribution and production by alternative splicing.". Biochem. Biophys. Res. Commun. 194 (1): 544–51. PMID 8333869. doi:10.1006/bbrc.1993.1854.
Larsson NG, Oldfors A, Garman JD, Barsh GS, Clayton DA (1997). "Down-regulation of mitochondrial transcription factor A during spermatogenesis in humans.". Hum. Mol. Genet. 6 (2): 185–91. PMID 9063738. doi:10.1093/hmg/6.2.185.
Lezza AM, Pesce V, Cormio A, Fracasso F, Vecchiet J, Felzani G, Cantatore P, Gadaleta MN (2001). "Increased expression of mitochondrial transcription factor A and nuclear respiratory factor-1 in skeletal muscle from aged human subjects.". FEBS Lett. 501 (1): 74–8. PMID 11457459. doi:10.1016/S0014-5793(01)02628-X.
Takamatsu C, Umeda S, Ohsato T, Ohno T, Abe Y, Fukuoh A, Shinagawa H, Hamasaki N, Kang D (2002). "Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein.". EMBO Rep. 3 (5): 451–6. PMC 1084112 . PMID 11964388. doi:10.1093/embo-reports/kvf099.
Falkenberg M, Gaspari M, Rantanen A, Trifunovic A, Larsson NG, Gustafsson CM (2002). "Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA.". Nat. Genet. 31 (3): 289–94. PMID 12068295. doi:10.1038/ng909.
Reyes A, Mezzina M, Gadaleta G (2002). "Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes.". Gene. 291 (1-2): 223–32. PMID 12095695. doi:10.1016/S0378-1119(02)00600-5.
Yoshida Y, Izumi H, Ise T, Uramoto H, Torigoe T, Ishiguchi H, Murakami T, Tanabe M, Nakayama Y, Itoh H, Kasai H, Kohno K (2002). "Human mitochondrial transcription factor A binds preferentially to oxidatively damaged DNA.". Biochem. Biophys. Res. Commun. 295 (4): 945–51. PMID 12127986. doi:10.1016/S0006-291X(02)00757-X.
Garrido N, Griparic L, Jokitalo E, Wartiovaara J, van der Bliek AM, Spelbrink JN (2003). "Composition and dynamics of human mitochondrial nucleoids.". Mol. Biol. Cell. 14 (4): 1583–96. PMC 153124 . PMID 12686611. doi:10.1091/mbc.E02-07-0399.
Yoshida Y, Izumi H, Torigoe T, Ishiguchi H, Itoh H, Kang D, Kohno K (2003). "P53 physically interacts with mitochondrial transcription factor A and differentially regulates binding to damaged DNA.". Cancer Res. 63 (13): 3729–34. PMID 12839966.
McCulloch V, Shadel GS (2003). "Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity.". Mol. Cell. Biol. 23 (16): 5816–24. PMC 166325 . PMID 12897151. doi:10.1128/MCB.23.16.5816-5824.2003.
Deschauer M, Kiefer R, Blakely EL, He L, Zierz S, Turnbull DM, Taylor RW (2003). "A novel Twinkle gene mutation in autosomal dominant progressive external ophthalmoplegia.". Neuromuscul. Disord. 13 (7-8): 568–72. PMID 12921794. doi:10.1016/S0960-8966(03)00071-3.
Günther C, von Hadeln K, Müller-Thomsen T, Alberici A, Binetti G, Hock C, Nitsch RM, Stoppe G, Reiss J, Gal A, Finckh U (2005). "Possible association of mitochondrial transcription factor A (TFAM) genotype with sporadic Alzheimer disease.". Neurosci. Lett. 369 (3): 219–23. PMID 15464268. doi:10.1016/j.neulet.2004.07.070.
Kanki T, Ohgaki K, Gaspari M, Gustafsson CM, Fukuoh A, Sasaki N, Hamasaki N, Kang D (2004). "Architectural role of mitochondrial transcription factor A in maintenance of human mitochondrial DNA.". Mol. Cell. Biol. 24 (22): 9823–34. PMC 525493 . PMID 15509786. doi:10.1128/MCB.24.22.9823-9834.2004.
Cam H, Balciunaite E, Blais A, Spektor A, Scarpulla RC, Young R, Kluger Y, Dynlacht BD (2004). "A common set of gene regulatory networks links metabolism and growth inhibition.". Mol. Cell. 16 (3): 399–411. PMID 15525513. doi:10.1016/j.molcel.2004.09.037.

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TFAM

Function

Interactions

References

Further reading