SYNCRIP

Available structures

Ortholog search: PDBe RCSB

List of PDB id codes
2DGU, 2MXT, 2NBB

Identifiers

Aliases

SYNCRIP, GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q, synaptotagmin binding cytoplasmic RNA interacting protein

External IDs

MGI: 1891690 HomoloGene: 4648 GeneCards: SYNCRIP

Gene location (Human)

Chr.	Chromosome 6 (human)^[1]

Band	No data available	Start	85,607,785 bp^[1]
Band	No data available	End	85,643,792 bp^[1]

Gene location (Mouse)

Chr.	Chromosome 9 (mouse)^[2]

Band	No data available	Start	88,447,009 bp^[2]
Band	No data available	End	88,482,574 bp^[2]

RNA expression pattern

More reference expression data

Gene ontology
Molecular function	• poly(A) binding • protein binding • nucleic acid binding • RNA binding
Cellular component	• CRD-mediated mRNA stability complex • cytoplasm • catalytic step 2 spliceosome • histone pre-mRNA 3'end processing complex • intracellular membrane-bounded organelle • intracellular ribonucleoprotein complex • nucleoplasm • endoplasmic reticulum • GAIT complex • spliceosomal complex • nucleus • membrane
Biological process	• CRD-mediated mRNA stabilization • mRNA splicing, via spliceosome • RNA processing • negative regulation of translation • mRNA processing • osteoblast differentiation • RNA splicing • cellular response to interferon-gamma • viral process • regulation of translation
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


10492


56403

Ensembl


ENSG00000135316


ENSMUSG00000032423

UniProt


O60506


Q7TMK9

RefSeq (mRNA)

NM_001159673 NM_001159674 NM_001159675 NM_001159676 NM_001159677
NM_001253771 NM_006372


NM_001284328 NM_019666 NM_019796 NM_001311113

RefSeq (protein)

NP_001153145 NP_001153146 NP_001153147 NP_001153148 NP_001153149
NP_001240700 NP_006363


NP_001271257 NP_001298042 NP_062640 NP_062770

Location (UCSC)

Chr 6: 85.61 – 85.64 Mb

Chr 6: 88.45 – 88.48 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Synaptotagmin binding, cytoplasmic RNA interacting protein, also known as Heterogeneous nuclear ribonucleoprotein Q is a protein that in humans is encoded by the SYNCRIP gene.^[5]^[6]^[7]

Interactions

SYNCRIP has been shown to interact with ACF,^[6]^[8] APOBEC1,^[6] SYT7^[9] and SYT9,^[9]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000135316 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000032423 - Ensembl, May 2017
↑ "Human PubMed Reference:".
↑ "Mouse PubMed Reference:".
↑ Harris CE, Boden RA, Astell CR (January 1999). "A novel heterogeneous nuclear ribonucleoprotein-like protein interacts with NS1 of the minute virus of mice". Journal of Virology. 73 (1): 72–80. PMC 103810 . PMID 9847309.
1 2 3 Lau PP, Chang BH, Chan L (April 2001). "Two-hybrid cloning identifies an RNA-binding protein, GRY-RBP, as a component of apobec-1 editosome". Biochemical and Biophysical Research Communications. 282 (4): 977–83. PMID 11352648. doi:10.1006/bbrc.2001.4679.
↑ "Entrez Gene: SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein".
↑ Blanc V, Navaratnam N, Henderson JO, Anant S, Kennedy S, Jarmuz A, Scott J, Davidson NO (March 2001). "Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing". The Journal of Biological Chemistry. 276 (13): 10272–83. PMID 11134005. doi:10.1074/jbc.M006435200.
1 2 Mizutani A, Fukuda M, Ibata K, Shiraishi Y, Mikoshiba K (March 2000). "SYNCRIP, a cytoplasmic counterpart of heterogeneous nuclear ribonucleoprotein R, interacts with ubiquitous synaptotagmin isoforms". The Journal of Biological Chemistry. 275 (13): 9823–31. PMID 10734137. doi:10.1074/jbc.275.13.9823.

Maruyama K, Sugano S (January 1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1-2): 171–4. PMID 8125298. doi:10.1016/0378-1119(94)90802-8.
Fu C, Chan AC (October 1997). "Identification of two tyrosine phosphoproteins, pp70 and pp68, which interact with phospholipase Cgamma, Grb2, and Vav after B cell antigen receptor activation". The Journal of Biological Chemistry. 272 (43): 27362–8. PMID 9341187. doi:10.1074/jbc.272.43.27362.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (October 1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1-2): 149–56. PMID 9373149. doi:10.1016/S0378-1119(97)00411-3.
Neubauer G, King A, Rappsilber J, Calvio C, Watson M, Ajuh P, Sleeman J, Lamond A, Mann M (September 1998). "Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex". Nature Genetics. 20 (1): 46–50. PMID 9731529. doi:10.1038/1700.
Mizutani A, Fukuda M, Ibata K, Shiraishi Y, Mikoshiba K (March 2000). "SYNCRIP, a cytoplasmic counterpart of heterogeneous nuclear ribonucleoprotein R, interacts with ubiquitous synaptotagmin isoforms". The Journal of Biological Chemistry. 275 (13): 9823–31. PMID 10734137. doi:10.1074/jbc.275.13.9823.
Grosset C, Chen CY, Xu N, Sonenberg N, Jacquemin-Sablon H, Shyu AB (September 2000). "A mechanism for translationally coupled mRNA turnover: interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex". Cell. 103 (1): 29–40. PMID 11051545. doi:10.1016/S0092-8674(00)00102-1.
Blanc V, Navaratnam N, Henderson JO, Anant S, Kennedy S, Jarmuz A, Scott J, Davidson NO (March 2001). "Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing". The Journal of Biological Chemistry. 276 (13): 10272–83. PMID 11134005. doi:10.1074/jbc.M006435200.
Mourelatos Z, Abel L, Yong J, Kataoka N, Dreyfuss G (October 2001). "SMN interacts with a novel family of hnRNP and spliceosomal proteins". The EMBO Journal. 20 (19): 5443–52. PMC 125643 . PMID 11574476. doi:10.1093/emboj/20.19.5443.
Rossoll W, Kröning AK, Ohndorf UM, Steegborn C, Jablonka S, Sendtner M (January 2002). "Specific interaction of Smn, the spinal muscular atrophy determining gene product, with hnRNP-R and gry-rbp/hnRNP-Q: a role for Smn in RNA processing in motor axons?". Human Molecular Genetics. 11 (1): 93–105. PMID 11773003. doi:10.1093/hmg/11.1.93.
Jurica MS, Licklider LJ, Gygi SR, Grigorieff N, Moore MJ (April 2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis". Rna. 8 (4): 426–39. PMC 1370266 . PMID 11991638. doi:10.1017/S1355838202021088.
Hresko RC, Mueckler M (July 2002). "Identification of pp68 as the Tyrosine-phosphorylated Form of SYNCRIP/NSAP1. A cytoplasmic RNA-binding protein". The Journal of Biological Chemistry. 277 (28): 25233–8. PMID 11994298. doi:10.1074/jbc.M202556200.
Carty SM, Greenleaf AL (August 2002). "Hyperphosphorylated C-terminal repeat domain-associating proteins in the nuclear proteome link transcription to DNA/chromatin modification and RNA processing". Molecular & Cellular Proteomics. 1 (8): 598–610. PMID 12376575. doi:10.1074/mcp.M200029-MCP200.
Angenstein F, Evans AM, Settlage RE, Moran ST, Ling SC, Klintsova AY, Shabanowitz J, Hunt DF, Greenough WT (October 2002). "A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons". The Journal of Neuroscience. 22 (20): 8827–37. PMID 12388589.
Hinsby AM, Olsen JV, Bennett KL, Mann M (January 2003). "Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry". Molecular & Cellular Proteomics. 2 (1): 29–36. PMID 12601080. doi:10.1074/mcp.M200075-MCP200.
Moraes KC, Quaresma AJ, Maehnss K, Kobarg J (January 2003). "Identification and characterization of proteins that selectively interact with isoforms of the mRNA binding protein AUF1 (hnRNP D)". Biological Chemistry. 384 (1): 25–37. PMID 12674497. doi:10.1515/BC.2003.004.
Kim JH, Paek KY, Ha SH, Cho S, Choi K, Kim CS, Ryu SH, Jang SK (September 2004). "A cellular RNA-binding protein enhances internal ribosomal entry site-dependent translation through an interaction downstream of the hepatitis C virus polyprotein initiation codon". Molecular and Cellular Biology. 24 (18): 7878–90. PMC 515056 . PMID 15340051. doi:10.1128/MCB.24.18.7878-7890.2004.
Quaresma AJ, Bressan GC, Gava LM, Lanza DC, Ramos CH, Kobarg J (April 2009). "Human hnRNP Q re-localizes to cytoplasmic granules upon PMA, thapsigargin, arsenite and heat-shock treatments". Experimental Cell Research. 315 (6): 968–80. PMID 19331829. doi:10.1016/j.yexcr.2009.01.012.
Moraes KC, Quaresma AJ, Maehnss K, Kobarg J (January 2003). "Identification and characterization of proteins that selectively interact with isoforms of the mRNA binding protein AUF1 (hnRNP D)". Biological Chemistry. 384 (1): 25–37. ISSN 1431-6730. PMID 12674497. doi:10.1515/BC.2003.004.

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SYNCRIP

Interactions

References

Further reading