List of Junior F.C. managers
This is a list of all former coaches of Atlético Junior. Current coach Julio Comesaña took over for Alberto Gamero in April 2017.
Coaches
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 Dragan Miranović (Feb 2003–June 3)- Dušan Drašković (July 2003–Aug 03)
 Othon Dacunha (interim) (Aug 2003) Jorge Luis Pinto (Aug 2003–June 4) Miguel Ángel López (Aug 2004–May 5)- Carlos Ischia (July 2005–Sept 05)
- Norberto Peluffo (Sept 2005–April 6)
- Jorge Alcázar (interim) (April 2006–May 6)
 Dragan Miranović (July 2006–Oct 06)- Miguel Ángel López (Oct 2006–May 7)
- Luis Grau (July 2007–Nov 08)
- Santiago Escobar (Jan 1, 2008–March 1, 2008)
 Julio Comesaña (March 11, 2008–Dec 31, 2009)- Diego Umaña (Jan 1, 2010–Dec 31, 2010)
- Ó.H. Quintabani (Nov 16, 2010–May 30, 2011)
- Fernel Díaz (interim) (May 2011–June 11)
- Jorge Luis Pinto (June 1, 2011–Aug 31, 2011)
- José "Cheché" Hernández (Sept 1, 2011–Dec 31, 2012)
- Alexis García (Jan 1, 2013–June 4, 2013)
- Miguel Ángel López (June 5, 2013 – March 19, 2014)
- David Pinillos (May 2014)
- Julio Comesaña (May 2014–Dec 14)
- Alexis Mendoza (Jan 2015–July 2016)
- Giovanni Hernández (25 July 2016–21 November 2016)
- Alberto Gamero (27 December 2016–26 March 2017)
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