CIB1

Available structures

Ortholog search: PDBe RCSB

List of PDB id codes
1DGU, 1DGV, 1XO5, 1Y1A, 2L4H, 2L4I, 2LM5

Identifiers

Aliases

CIB1, CIB, CIBP, KIP1, PRKDCIP, SIP2-28, calcium and integrin binding 1

External IDs

MGI: 1344418 HomoloGene: 4654 GeneCards: CIB1

Gene ontology
Molecular function	• protein serine/threonine kinase inhibitor activity • calcium ion binding • protein anchor • ion channel binding • Ras GTPase binding • metal ion binding • protein C-terminus binding • protein binding • calcium-dependent protein kinase inhibitor activity • protein kinase binding
Cellular component	• cytoplasm • vesicle • Golgi apparatus • cell projection • centrosome • membrane • growth cone • plasma membrane • nucleoplasm • microtubule organizing center • ruffle membrane • axon • filopodium tip • dendrite • neuronal cell body • apical plasma membrane • endoplasmic reticulum • perinuclear region of cytoplasm • neuron projection • sarcolemma • extracellular exosome • cytoskeleton • nucleus • cell periphery • lamellipodium
Biological process	• negative regulation of protein phosphorylation • positive regulation of protein targeting to membrane • thrombopoietin-mediated signaling pathway • negative regulation of protein kinase B signaling • cell differentiation • cellular response to nerve growth factor stimulus • positive regulation of protein phosphorylation • negative regulation of neuron projection development • regulation of cell division • positive regulation of cell migration involved in sprouting angiogenesis • extrinsic apoptotic signaling pathway • positive regulation of cell-matrix adhesion • positive regulation of cell migration • cellular response to growth factor stimulus • cellular response to tumor necrosis factor • platelet formation • negative regulation of apoptotic process • negative regulation of megakaryocyte differentiation • positive regulation of protein serine/threonine kinase activity • positive regulation of calcineurin-NFAT signaling cascade • cell division • cellular response to DNA damage stimulus • negative regulation of microtubule depolymerization • positive regulation of substrate adhesion-dependent cell spreading • positive regulation of cell growth • response to ischemia • cell adhesion • regulation of cell proliferation • positive regulation of NF-kappaB transcription factor activity • double-strand break repair • angiogenesis • spermatogenesis • positive regulation of cell proliferation • spermatid development • positive regulation of ERK1 and ERK2 cascade • cytoplasmic microtubule organization • endomitotic cell cycle • cell cycle • positive regulation of cell adhesion mediated by integrin • positive regulation of male germ cell proliferation • negative regulation of cell proliferation • apoptotic process • positive regulation of catalytic activity • negative regulation of protein kinase activity • negative regulation of protein serine/threonine kinase activity • positive regulation of protein localization to plasma membrane
Sources:Amigo / QuickGO

RNA expression pattern

More reference expression data

Orthologs

Species

Human

Mouse

Entrez


10519


23991

Ensembl


ENSG00000185043


ENSMUSG00000030538

UniProt


Q99828


Q9Z0F4

RefSeq (mRNA)


NM_001277764 NM_006384


NM_001291275 NM_001291276 NM_011870

RefSeq (protein)


NP_001264693 NP_006375


NP_001278204 NP_001278205 NP_036000

Location (UCSC)

Chr 15: 90.23 – 90.23 Mb

Chr 7: 80.23 – 80.23 Mb

PubMed search

^[1]

^[2]

Wikidata

View/Edit Human

View/Edit Mouse

Calcium and integrin-binding protein 1 is a protein that in humans is encoded by the CIB1 gene.^[3]^[4]^[5]

The protein encoded by this gene is a member of the calcium-binding protein family. The specific function of this protein has not yet been determined; however this protein is known to interact with DNA-dependent protein kinase and may play a role in kinase-phosphatase regulation of DNA end-joining. This protein also interacts with integrin alpha(IIb)beta(3), which may implicate this protein as a regulatory molecule for alpha(IIb)beta(3).^[5]

Interactions

CIB1 has been shown to interact with RAC3,^[6] PSEN2,^[7] DNA-PKcs,^[8] UBR5^[9] and CD61.^[3]

References

↑ "Human PubMed Reference:".
↑ "Mouse PubMed Reference:".
1 2 Naik UP, Patel PM, Parise LV (Apr 1997). "Identification of a novel calcium-binding protein that interacts with the integrin alphaIIb cytoplasmic domain". J Biol Chem. 272 (8): 4651–4. PMID 9030514. doi:10.1074/jbc.272.8.4651.
↑ Hattori A, Seki N, Hayashi A, Kozuma S, Saito T (Aug 2000). "Genomic structure of mouse and human genes for DNA-PKcs interacting protein (KIP)". DNA Seq. 10 (6): 415–8. PMID 10826701. doi:10.3109/10425170009015612.
1 2 "Entrez Gene: CIB1 calcium and integrin binding 1 (calmyrin)".
↑ Haataja, Leena; Kaartinen Vesa; Groffen John; Heisterkamp Nora (Mar 2002). "The small GTPase Rac3 interacts with the integrin-binding protein CIB and promotes integrin alpha(IIb)beta(3)-mediated adhesion and spreading". J. Biol. Chem. United States. 277 (10): 8321–8. ISSN 0021-9258. PMID 11756406. doi:10.1074/jbc.M105363200.
↑ Stabler, S M; Ostrowski L L; Janicki S M; Monteiro M J (Jun 1999). "A myristoylated calcium-binding protein that preferentially interacts with the Alzheimer's disease presenilin 2 protein". J. Cell Biol. UNITED STATES. 145 (6): 1277–92. ISSN 0021-9525. PMC 2133148 . PMID 10366599. doi:10.1083/jcb.145.6.1277.
↑ Wu, X; Lieber M R (Oct 1997). "Interaction between DNA-dependent protein kinase and a novel protein, KIP". Mutat. Res. NETHERLANDS. 385 (1): 13–20. ISSN 0027-5107. PMID 9372844. doi:10.1016/s0921-8777(97)00035-9.
↑ Henderson, Michelle J; Russell Amanda J; Hird Samantha; Muñoz Marcia; Clancy Jennifer L; Lehrbach Gillian M; Calanni Sophina T; Jans David A; Sutherland Robert L; Watts Colin K W (Jul 2002). "EDD, the human hyperplastic discs protein, has a role in progesterone receptor coactivation and potential involvement in DNA damage response". J. Biol. Chem. United States. 277 (29): 26468–78. ISSN 0021-9258. PMID 12011095. doi:10.1074/jbc.M203527200.

External links

Human CIB1 genome location and CIB1 gene details page in the UCSC Genome Browser.

Wu X, Lieber MR (1997). "Interaction between DNA-dependent protein kinase and a novel protein, KIP.". Mutat. Res. 385 (1): 13–20. PMID 9372844. doi:10.1016/s0921-8777(97)00035-9.
Seki N, Hayashi A, Abe M, et al. (1999). "Chromosomal assignment of the gene for human DNA-PKcs interacting protein (KIP) on chromosome 15q25.3-q26.1 by somatic hybrid analysis and fluorescence in situ hybridization.". J. Hum. Genet. 43 (4): 275–7. PMID 9852683. doi:10.1007/s100380050089.
Stabler SM, Ostrowski LL, Janicki SM, Monteiro MJ (1999). "A myristoylated calcium-binding protein that preferentially interacts with the Alzheimer's disease presenilin 2 protein.". J. Cell Biol. 145 (6): 1277–92. PMC 2133148 . PMID 10366599. doi:10.1083/jcb.145.6.1277.
Kauselmann G, Weiler M, Wulff P, et al. (1999). "The polo-like protein kinases Fnk and Snk associate with a Ca(2+)- and integrin-binding protein and are regulated dynamically with synaptic plasticity.". EMBO J. 18 (20): 5528–39. PMC 1171621 . PMID 10523297. doi:10.1093/emboj/18.20.5528.
Hwang PM, Vogel HJ (2000). "Structures of the platelet calcium- and integrin-binding protein and the alphaIIb-integrin cytoplasmic domain suggest a mechanism for calcium-regulated recognition; homology modelling and NMR studies.". J. Mol. Recognit. 13 (2): 83–92. PMID 10822252. doi:10.1002/(SICI)1099-1352(200003/04)13:2<83::AID-JMR491>3.0.CO;2-A.
Holtrich U, Wolf G, Yuan J, et al. (2000). "Adhesion induced expression of the serine/threonine kinase Fnk in human macrophages.". Oncogene. 19 (42): 4832–9. PMID 11039900. doi:10.1038/sj.onc.1203845.
Haataja L, Kaartinen V, Groffen J, Heisterkamp N (2002). "The small GTPase Rac3 interacts with the integrin-binding protein CIB and promotes integrin alpha(IIb)beta(3)-mediated adhesion and spreading.". J. Biol. Chem. 277 (10): 8321–8. PMID 11756406. doi:10.1074/jbc.M105363200.
Whitehouse C, Chambers J, Howe K, et al. (2002). "NBR1 interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB) and shows developmentally restricted expression in the neural tube.". Eur. J. Biochem. 269 (2): 538–45. PMID 11856312. doi:10.1046/j.0014-2956.2001.02681.x.
Hollenbach AD, McPherson CJ, Lagutina I, Grosveld G (2002). "The EF-hand calcium-binding protein calmyrin inhibits the transcriptional and DNA-binding activity of Pax3.". Biochim. Biophys. Acta. 1574 (3): 321–8. PMID 11997098. doi:10.1016/s0167-4781(02)00230-0.
Henderson MJ, Russell AJ, Hird S, et al. (2002). "EDD, the human hyperplastic discs protein, has a role in progesterone receptor coactivation and potential involvement in DNA damage response.". J. Biol. Chem. 277 (29): 26468–78. PMID 12011095. doi:10.1074/jbc.M203527200.
Barry WT, Boudignon-Proudhon C, Shock DD, et al. (2002). "Molecular basis of CIB binding to the integrin alpha IIb cytoplasmic domain.". J. Biol. Chem. 277 (32): 28877–83. PMID 12023286. doi:10.1074/jbc.M202983200.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. PMC 139241 . PMID 12477932. doi:10.1073/pnas.242603899.
Ma S, Liu MA, Yuan YL, Erikson RL (2003). "The serum-inducible protein kinase Snk is a G1 phase polo-like kinase that is inhibited by the calcium- and integrin-binding protein CIB.". Mol. Cancer Res. 1 (5): 376–84. PMID 12651910.
Naik UP, Naik MU (2003). "Association of CIB with GPIIb/IIIa during outside-in signaling is required for platelet spreading on fibrinogen.". Blood. 102 (4): 1355–62. PMID 12714504. doi:10.1182/blood-2003-02-0591.
Naik MU, Naik UP (2004). "Calcium-and integrin-binding protein regulates focal adhesion kinase activity during platelet spreading on immobilized fibrinogen.". Blood. 102 (10): 3629–36. PMID 12881299. doi:10.1182/blood-2003-05-1703.
Yamniuk AP, Nguyen LT, Hoang TT, Vogel HJ (2004). "Metal ion binding properties and conformational states of calcium- and integrin-binding protein.". Biochemistry. 43 (9): 2558–68. PMID 14992593. doi:10.1021/bi035432b.
Lee GE, Yu EY, Cho CH, et al. (2004). "DNA-protein kinase catalytic subunit-interacting protein KIP binds telomerase by interacting with human telomerase reverse transcriptase.". J. Biol. Chem. 279 (33): 34750–5. PMID 15190070. doi:10.1074/jbc.M401843200.
Lehner B, Sanderson CM (2004). "A protein interaction framework for human mRNA degradation.". Genome Res. 14 (7): 1315–23. PMC 442147 . PMID 15231747. doi:10.1101/gr.2122004.

PDB gallery

1dgu: HOMOLOGY-BASED MODEL OF CALCIUM-SATURATED CIB (CALCIUM-AND INTEGRIN-BINDING PROTEIN)

1dgv: HOMOLOGY-BASED MODEL OF APO CIB (CALCIUM-AND INTEGRIN-BINDING PROTEIN)

1xo5: Crystal structure of CIB1, an EF-hand, integrin and kinase-binding protein

1y1a: CRYSTAL STRUCTURE OF CALCIUM AND INTEGRIN BINDING PROTEIN

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CIB1

Interactions

References

External links

Further reading