Blast2GO
|
Blast2GO | |
| Type | Bioinformatics software |
|---|---|
| Inception | 2011 |
| Manufacturer | BioBam_Bioinformatics |
| Models made | Demo, Basic, Trial, Pro, Plugin, Commandline |
| Website | https://www.blast2go.com |
Blast2GO, first published in 2005,[1][2][3][4] is a bioinformatics software tool for the automatic, high-throughput functional annotation of novel sequence data (genes proteins). It makes use of the BLAST[5] algorithm to identify similar sequences to then transfers existing functional annotation from yet characterised sequences to the novel one. The functional information is represented via the Gene Ontology (GO), a controlled vocabulary of functional attributes. The Gene Ontology, or GO, is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.[6]
See also
References
- ↑ Conesa, A; Götz, S; García-Gómez, JM; Terol, J; Talón, M; Robles, M (Sep 15, 2005). "Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.". Bioinformatics (Oxford, England). 21 (18): 3674–6. PMID 16081474. doi:10.1093/bioinformatics/bti610.
- ↑ Götz, S; García-Gómez, JM; Terol, J; Williams, TD; Nagaraj, SH; Nueda, MJ; Robles, M; Talón, M; Dopazo, J; Conesa, A (June 2008). "High-throughput functional annotation and data mining with the Blast2GO suite". Nucleic Acids Research. 36 (10): 3420–35. PMC 2425479
. PMID 18445632. doi:10.1093/nar/gkn176. - ↑ Conesa, A; Götz, S (2008). "Blast2GO: A comprehensive suite for functional analysis in plant genomics". International journal of plant genomics. 2008: 619832. PMC 2375974 . PMID 18483572. doi:10.1155/2008/619832.
- ↑ Götz, S; Arnold, R; Sebastián-León, P; Martín-Rodríguez, S; Tischler, P; Jehl, MA; Dopazo, J; Rattei, T; Conesa, A (Apr 1, 2011). "B2G-FAR, a species-centered GO annotation repository". Bioinformatics (Oxford, England). 27 (7): 919–24. PMC 3065692 . PMID 21335611. doi:10.1093/bioinformatics/btr059.
- ↑ Altschul, SF; Gish, W; Miller, W; Myers, EW; Lipman, DJ (Oct 5, 1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–10. PMID 2231712. doi:10.1016/S0022-2836(05)80360-2.
- ↑ The Gene Ontology Consortium (January 2008). "The Gene Ontology project in 2008". Nucleic Acids Res. 36 (Database issue): D440–4. PMC 2238979 . PMID 17984083. doi:10.1093/nar/gkm883.
External links
- Official website Blast2GO - Tool for functional annotation of (novel) sequences and the analysis of annotation data.
- Company developing Blast2GO — BioBam Bioinformatics S.L., a bioinformatics company dedicated to creating user-friendly software for the scientific community is developing, maintaining and distributing Blast2GO.
- Gene Ontology Tools — Provides access to the ontologies, software tools, annotated gene product lists, and reference documents describing the GO and its uses.
- PlantRegMap -- Plant GO annotation for 165 species and GO enrichment analysis
This article is issued from
Wikipedia.
The text is licensed under Creative Commons - Attribution - Sharealike.
Additional terms may apply for the media files.