The Genome Analysis Centre
Established | 3 July 2009[1] |
---|---|
Field of research | |
Director | Prof Dylan Edwards |
Address | Norwich Research Park |
Location |
Colney, Norfolk, England Coordinates: 52°37′37″N 1°13′08″E / 52.6269°N 1.219°E |
Zip code | NR4 7UH |
Affiliations | |
Operating agency | |
Website |
www |
The Genome Analysis Centre (TGAC) is a life science research centre located at the Norwich Research Park (NRP), Norwich, England. TGAC's research areas are broad and cover bioinformatics, computational biology, host pathogen interaction, plant and microbial genomics, and vertebrate health among others.
History
It was established by the Biotechnology and Biological Sciences Research Council in partnership with East of England Development Agency (EEDA), Norfolk County Council, Norwich City Council, South Norfolk Council and the Greater Norwich Development Partnership. It cost £13.5 million, and was built by Morgan Sindall. It was officially opened on 3 July 2009[1] by John Sulston, winner of the 2002 Nobel Prize in Physiology or Medicine, and former Director of the Wellcome Trust Sanger Institute, another genomics research institution.
In early June 2011, it unveiled a supercomputer on its site that has the most powerful processor in the world that runs Red Hat Linux, with six terabytes of RAM. It was installed to crack the structure of the wheat genome, which is five times larger than the human genome.
Launched MISO (Managing Information for Sequencing Operations).
Structure
It is situated on the Norwich Research Park, to the west of Norwich on the former A47 (B1108), and adjacent to the west of the University of East Anglia, next to the River Yare.
Function
The goal of this research centre is to be at the forefront of data intensive science in biology, to be a leader in bioinformatics innovation and the application of genome technology and to enable bioscience through dissemination of the data and technology produced in the institute and in collaboration with external scientists worldwide. It will concentrate on wheat and ryegrass.
Directors
The Genome Analysis Centre (TGAC) has been directed by:
- Jane Rogers from July 2009 to October 2012;
- Mario Caccamo from November 2013 to May 2015;
- Prof Dylan Edwards from July 2015 (Interim Diretor)
Communicating Science
One of the responsibilities of TGAC is to communicate the science it undertakes to a range of audiences, such as the international scientific community, the general public, school children, and students. It runs various programmes throughout the year to deliver this responsibility. TGAC further communicate their work on their blog.
Facilities
Sequencing Platforms
TGAC is equipped with next-generation sequencing platforms for high-throughput sequence generation for research projects and sequence improvement. We engage with platform developers to ensure early access and integration into the institute's portfolio of projects and tools.
- Illumina HiSeq2000/2500
- Illumina MiSeq
- PacBio RSII
- OpGen Argus
- Life Technologies Ion Proton
Computing Platform
TGAC deploys and maintains leading edge high-performance computing resources that help keep the UK at the forefront of genomics and computational bioscience. Our heterogeneous computing environment allows researchers to exploit distributed-memory and large shared-memory supercomputers along with GPU, Xeon-Phi and FPGA accelerators, to tackle any computational challenge.
System | Compute Blades | Sockets per Blade | Cores per Socket | Total Cores | Memory Capacity per Blade | Total Memory Capacity | Accelerators | Interconnect | Local Filesystem Storage | Operating System | Scheduler |
---|---|---|---|---|---|---|---|---|---|---|---|
SGI UV2000 | 176 | 2 | 8 (Intel Eight-core SandyBridge E5-4650L @ 2.6 GHz) | 2816 | 128GB | 22 Terabytes | 32 x Xeon-Phi 5110P. 8GB RAM and 60 cores per Phi @ 1.1GHz | Numalink 6 | 110TB CXFS Scratch Space | RHEL 6.4 | PBS |
SGI UV100 (x2) | 48 | 2 | 8 (Intel Eight-Core Xeon E7-8837 @ 2.66 GHz) | 768 | 128GB | 6 Terabytes | Numalink 5 | 110TB CXFS Scratch Space | RHEL 6.4 | PBS | |
AMD Opteron Cluster | 60 | 4 | 8 (AMD Opteron ‘Magny-Cour’ @ 2.3 GHz) | 1920 | 56x128GB, 4x256GB | 8 Terabytes | 6 x Xeon-Phi 5110P. 8GB RAM and 60 cores per Phi @ 1.1GHz, Tesla GPUs | 1/10 GB/s Ethernet | 216GB local disk per node, 6x 512GB SSD | CentOS v5/6 | LSF |
External links
References
- 1 2 "BBC NEWS | UK | England | Norfolk | Support hope for new genome unit". Retrieved 2012-06-22.