Synthetic molecular motor

This article is about man-made molecular motors. For the naturally occurring protein rotors, see Molecular motor.

Synthetic molecular motors are molecular machines capable of rotation under energy input. Although the term "molecular motor" has traditionally referred to a naturally occurring protein that induces motion (via protein dynamics), some groups also use the term when referring to non-biological, non-peptide synthetic motors. Many chemists are pursuing the synthesis of such molecular motors.[1] The prospect of synthetic molecular motors was first raised by the nanotechnology pioneer Richard Feynman in 1959 in his talk There's Plenty of Room at the Bottom.

The basic requirements for a synthetic motor are repetitive 360° motion, the consumption of energy and unidirectional rotation. The first two efforts in this direction, the chemically driven motor by Dr. T. Ross Kelly of Boston College with co-workers and the light-driven motor by Feringa and co-workers, were published in 1999 in the same issue of Nature. In 2008 Petr Král and co-workers proposed electron tunneling motors continuously rotated by a permanent torque, opening the possibility of practical realization of a real molecular motor machine. It is expected that reports of more efforts in this field will increase as understanding of chemistry and physics at the nanolevel improves.

Chemically driven rotary molecular motors

The chemically driven rotary molecular motor by Kelly and co-workers.

An example of a synthetic chemically driven rotary molecular motor was reported by Kelly and co-workers in 1999.[2] Their system is made up from a three-bladed triptycene rotor and a helicene, and is capable of performing a unidirectional 120° rotation.

This rotation takes place in five steps. The amine group present on the triptycene moiety is converted to an isocyanate group by condensation with phosgene (a). Thermal or spontaneous rotation around the central bond then brings the isocyanate group in proximity of the hydroxyl group located on the helicene moiety (b), thereby allowing these two groups to react with each other (c). This reaction irreversibly traps the system as a strained cyclic urethane that is higher in energy and thus energetically closer to the rotational energy barrier than the original state. Further rotation of the triptycene moiety therefore requires only a relatively small amount of thermal activation in order to overcome this barrier, thereby releasing the strain (d). Finally, cleavage of the urethane group restores the amine and alcohol functionalities of the molecule (e).

The result of this sequence of events is a unidirectional 120° rotation of the triptycene moiety with respect to the helicene moiety. Additional forward or backward rotation of the triptycene rotor is inhibited by the helicene moiety, which serves a function similar to that of the pawl of a ratchet. The unidirectionality of the system is a result from both the asymmetric skew of the helicene moiety as well as the strain of the cyclic urethane which is formed in c. This strain can be only be lowered by the clockwise rotation of the triptycene rotor in d, as both counterclockwise rotation as well as the inverse process of d are energetically unfavorable. In this respect the preference for the rotation direction is determined by both the positions of the functional groups and the shape of the helicene and is thus built into the design of the molecule instead of dictated by external factors.

The motor by Kelly and co-workers is an elegant example of how chemical energy can be used to induce controlled, unidirectional rotational motion, a process which resembles the consumption of ATP in organisms in order to fuel numerous processes. However, it does suffer from a serious drawback: the sequence of events that leads to 120° rotation is not repeatable. Kelly and co-workers have therefore searched for ways to extend the system so that this sequence can be carried out repeatedly. Unfortunately, their attempts to accomplish this objective have not been successful and currently the project has been abandoned.[3]

Two additional examples of synthetic chemically driven rotary molecular motors that have been reported in literature make use of the stereoselective ring opening of a racemic biaryl lactone by the use of chiral reagents, which results in a directed 90° rotation of one aryl with respect to the other aryl. Branchaud and co-workers have reported that this approach, followed by an additional ring closing step, can be used to accomplish a non-repeatable 180° rotation.[4] Feringa and co-workers used this approach in their design of a molecule that can repeatably perform 360° rotation.[5] The full rotation of this molecular motor takes place in four stages. In stages A and C rotation of the aryl moiety is restricted, although helix inversion is possible. In stages B and D the aryl can rotate with respect to the naphthalene with steric interactions preventing the aryl from passing the naphthalene. The rotary cycle consists of four chemically induced steps which realize the conversion of one stage into the next. Steps 1 and 3 are asymmetric ring opening reactions which make use of a chiral reagent in order to control the direction of the rotation of the aryl. Steps 2 and 4 consist of the deprotection of the phenol, followed by regioselective ring formation. So far this molecular motor is the only reported example of a fully chemically driven artificial rotary molecular motor that is capable of 360° rotation.

The chemically driven rotary molecular motor by Feringa and co-workers.

Light-driven rotary molecular motors

Rotary cycle of the light-driven rotary molecular motor by Feringa and co-workers.

In 1999 the laboratory of Prof. Dr. Ben L. Feringa at the University of Groningen, The Netherlands reported the creation of a unidirectional molecular rotor.[6] Their 360° molecular motor system consists of a bis-helicene connected by an alkene double bond displaying axial chirality and having two stereocenters.

One cycle of unidirectional rotation takes 4 reaction steps. The first step is a low temperature endothermic photoisomerization of the trans (P,P) isomer 1 to the cis (M,M) 2 where P stands for the right-handed helix and M for the left-handed helix. In this process, the two axial methyl groups are converted into two less sterically favorable equatorial methyl groups.

By increasing the temperature to 20 °C these methyl groups convert back exothermally to the (P,P) cis axial groups (3) in a helix inversion. Because the axial isomer is more stable than the equatorial isomer, reverse rotation is blocked. A second photoisomerization converts (P,P) cis 3 into (M,M) trans 4, again with accompanying formation of sterically unfavorable equatorial methyl groups. A thermal isomerization process at 60 °C closes the 360° cycle back to the axial positions.

Synthetic molecular motors: fluorene system

A major hurdle to overcome is the long reaction time for complete rotation in these systems, which does not compare to rotation speeds displayed by motor proteins in biological systems. In the fastest system to date, with a fluorene lower half, the half-life of the thermal helix inversion is 0.005 seconds.[7] This compound is synthesized using the Barton-Kellogg reaction. In this molecule the slowest step in its rotation, the thermally induced helix-inversion, is believed to proceed much more quickly because the larger tert-butyl group makes the unstable isomer even less stable than when the methyl group is used. This is because the unstable isomer is more destabilized than the transition state that leads to helix-inversion. The different behaviour of the two molecules is illustrated by the fact that the half-life time for the compound with a methyl group instead of a tert-butyl group is 3.2 minutes.[8]

The Feringa principle has been incorporated into a prototype nanocar.[9] The car synthesized has a helicene-derived engine with an oligo (phenylene ethynylene) chassis and four carborane wheels and is expected to be able to move on a solid surface with scanning tunneling microscopy monitoring, although so far this has not been observed. The motor does not perform with fullerene wheels because they quench the photochemistry of the motor moiety. Feringa motors have also been shown to remain operable when chemically attached to solid surfaces.[10][11] The ability of certain Feringa systems to act as an asymmetric catalyst has also been demonstrated.[12][13]

Experimental demonstration of a single molecule-electric motor

A single molecule electric motor has been reported that is an electrically operated motor made from a single butyl methyl sulphide molecule. The molecule is adsorbed onto a Copper (111) single crystal piece by chemisorption.

Nanoscopic observation of molecular rotation

A rotor and a stator are the two required components for harnessing rotational motion. A nanoscopic rotor-stator pair can be fabricated by confining propeller-shaped (supra)molecules to a nanopore, serving as an armature with the pertinent diameter. An alternative to circular stators are hexagonal lattices made of molecules, which are widely known in the field of two-dimensional molecular self-assembly and molecular engineering. Using hexagonal nanopores on a silver substrate, real-time molecular rotation can be observed and analyzed at metallic interfaces, aided by scanning tunneling microscopy experiments and molecular dynamics simulations.[14][15]

Scanning tunneling microscopy ~100 second rotation movie of a supramolecule composed of three molecules in a confined nanoscopic pore (outer diameter = 6.7 nm) on a silver surface at ~ 80 K.Molecular dynamics ~1 nanosecond rotation movie of a supramolecule composed of three molecules in a confined nanoscopic pore (outer diameter = 6.7 nm) on a silver surface at ~ 250 K.

See also

References

  1. ↑ Quinn, Jordan R. (2002) Synthetic Molecular Motors. scs.uiuc.edu
  2. ↑ Kelly, T. R.; De Silva, H; Silva, R. A. (1999). "Unidirectional rotary motion in a molecular system". Nature 401 (6749): 150–2. doi:10.1038/43639. PMID 10490021.
  3. ↑ Kelly, T. Ross; Cai, Xiaolu; Damkaci, Fehmi; Panicker, Sreeletha B.; Tu, Bin; Bushell, Simon M.; Cornella, Ivan; Piggott, Matthew J.; Salives, Richard; Cavero, Marta; Zhao, Yajun; Jasmin, Serge (2007). "Progress toward a Rationally Designed, Chemically Powered Rotary Molecular Motor". Journal of the American Chemical Society 129 (2): 376. doi:10.1021/ja066044a. PMID 17212418.
  4. ↑ Lin, Ying; Dahl, Bart J.; Branchaud, Bruce P. (2005). "Net directed 180° aryl–aryl bond rotation in a prototypical achiral biaryl lactone synthetic molecular motor". Tetrahedron Letters 46 (48): 8359. doi:10.1016/j.tetlet.2005.09.151.
  5. ↑ Fletcher, S. P.; Dumur, F; Pollard, MM; Feringa, BL (2005). "A Reversible, Unidirectional Molecular Rotary Motor Driven by Chemical Energy". Science 310 (5745): 80–2. doi:10.1126/science.1117090. PMID 16210531.
  6. ↑ Feringa, Ben L.; Koumura, Nagatoshi; Zijlstra, Robert W. J.; Van Delden, Richard A.; Harada, Nobuyuki (1999). "Light-driven monodirectional molecular rotor". Nature 401 (6749): 152. doi:10.1038/43646. PMID 10490022.
  7. ↑ Vicario, Javier; Walko, Martin; Meetsma, Auke; Feringa, Ben L. (2006). "Fine Tuning of the Rotary Motion by Structural Modification in Light-Driven Unidirectional Molecular Motors". Journal of the American Chemical Society 128 (15): 5127. doi:10.1021/ja058303m. PMID 16608348.
  8. ↑ Vicario, Javier; Meetsma, Auke; Feringa, Ben L. (2005). "Controlling the speed of rotation in molecular motors. Dramatic acceleration of the rotary motion by structural modification". Chemical Communications (47): 5910. doi:10.1039/b507264f.
  9. ↑ Morin, Jean-François; Shirai, Yasuhiro; Tour, James M. (2006). "En Route to a Motorized Nanocar". Organic Letters 8 (8): 1713. doi:10.1021/ol060445d. PMID 16597148.
  10. ↑ Carroll, Gregory T.; Pollard, Michael M.; Van Delden, Richard; Feringa, Ben L. (2010). "Controlled rotary motion of light-driven molecular motors assembled on a gold film". Chemical Science 1: 97. doi:10.1039/C0SC00162G.
  11. ↑ Carroll, Gregory T.; London, Gábor; Landaluce, Tatiana FernáNdez; Rudolf, Petra; Feringa, Ben L. (2011). "Adhesion of photon-driven molecular motors to surfaces via 1, 3-dipolar cycloadditions: Effect of interfacial interactions on molecular motion". ACS Nano 5 (1): 622–30. doi:10.1021/nn102876j. PMID 21207983.
  12. ↑ Wang, J.; Feringa, B. L. (2011). "Dynamic Control of Chiral Space in a Catalytic Asymmetric Reaction Using a Molecular Motor Science". Science 331 (6023): 1429. doi:10.1126/science.1199844. PMID 21310964.
  13. ↑ Ooi, T. (2011). "Heat and Light Switch a Chiral Catalyst and Its Products". Science 331 (6023): 1395–6. doi:10.1126/science.1203272. PMID 21415343.
  14. ↑ Kuhne, D.; Klappenberger, F.; Krenner, W.; Klyatskaya, S.; Ruben, M.; Barth, J. V. (2010). "Rotational and constitutional dynamics of caged supramolecules". Proceedings of the National Academy of Sciences 107 (50): 21332. doi:10.1073/pnas.1008991107.
  15. ↑ Kuhne, D.; Klappenberger, F.; Krenner, W.; Klyatskaya, S.; Ruben, M.; Barth, J. V. (2010). "Topological Dynamics in Supramolecular Rotors". Proceedings of the National Academy of Sciences 107 (50): 21332. doi:10.1073/pnas.1008991107.
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