PSMA4

Proteasome subunit alpha 4
PDB rendering based on 1iru.
Available structures PDB Ortholog search: PDBe, RCSB List of PDB id codes 4R3O​, 4R67​
Identifiers
Symbols	PSMA4 ; HC9; HsT17706; PSC9
External IDs	OMIM: 176846 MGI: 1347060 HomoloGene: 2083 GeneCards: PSMA4 Gene
EC number	3.4.25.1
Gene ontology Molecular function • endopeptidase activity • threonine-type endopeptidase activity • protein binding Cellular component • proteasome complex • cytoplasmic mRNA processing body • nucleus • nucleoplasm • cytoplasm • cytosol • proteasome core complex • plasma membrane • proteasome core complex, alpha-subunit complex • intracellular membrane-bounded organelle • extracellular exosome Biological process • G1/S transition of mitotic cell cycle • protein polyubiquitination • mitotic cell cycle • stimulatory C-type lectin receptor signaling pathway • antigen processing and presentation of peptide antigen via MHC class I • antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent • regulation of cellular amino acid metabolic process • apoptotic process • DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest • gene expression • proteasomal ubiquitin-independent protein catabolic process • programmed cell death • viral process • anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process • cellular nitrogen compound metabolic process • antigen processing and presentation of exogenous peptide antigen via MHC class I • regulation of apoptotic process • negative regulation of apoptotic process • proteasome-mediated ubiquitin-dependent protein catabolic process • small molecule metabolic process • innate immune response • negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle • positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition • regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle • negative regulation of canonical Wnt signaling pathway • positive regulation of canonical Wnt signaling pathway Sources: Amigo / QuickGO
RNA expression pattern
More reference expression data
Orthologs
Species	Human	Mouse
Entrez	5685	26441
Ensembl	ENSG00000041357	ENSMUSG00000032301
UniProt	P25789	Q9R1P0
RefSeq (mRNA)	NM_001102667	NM_011966
RefSeq (protein)	NP_001096137	NP_036096
Location (UCSC)	Chr 15: 78.54 – 78.55 Mb	Chr 9: 54.95 – 54.96 Mb
PubMed search

Proteasome subunit alpha type-4 also known as macropain subunit C9, proteasome component C9, and 20S proteasome subunit alpha-3 is a protein that in humans is encoded by the PSMA4 gene.^[1] This protein is one of the 17 essential subunits (alpha subunits 1-7, constitutive beta subunits 1-7, and inducible subunits including beta1i, beta2i, beta5i) that contributes to the complete assembly of 20S proteasome complex.

Structure

Protein expression

The PSMA4 gene encodes a member of the peptidase T1A family, that is a 20S core alpha subunit.^[2] The gene has 9 exons and locates at chromosome band 15q25.1. The human protein proteasome subunit alpha type-4 is 29.5 kDa in size and composed of 261 amino acids. The calculated theoretical pI of this protein is 7.58.

Complex assembly

The proteasome is a multicatalytic proteinase complex with a highly ordered 20S core structure. This barrel-shaped core structure is composed of 4 axially stacked rings of 28 non-identical subunits: the two end rings are each formed by 7 alpha subunits, and the two central rings are each formed by 7 beta subunits. Three beta subunits (beta1, beta2, and beta5) each contains a proteolytic active site and has distinct substrate preferences. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway.^[3][4]

Function

Crystal structures of isolated 20S proteasome complex demonstrate that the two rings of beta subunits form a proteolytic chamber and maintain all their active sites of proteolysis within the chamber.^[4] Concomitantly, the rings of alpha subunits form the entrance for substrates entering the proteolytic chamber. In an inactivated 20S proteasome complex, the gate into the internal proteolytic chamber are guarded by the N-terminal tails of specific alpha-subunit.^[5][6] The proteolytic capacity of 20S core particle (CP) can be activated when CP associates with one or two regulatory particles (RP) on one or both side of alpha rings. These regulatory particles include 19S proteasome complexes, 11S proteasome complex, etc. Following the CP-RP association, the confirmation of certain alpha subunits will change and consequently cause the opening of substrate entrance gate. Besides RPs, the 20S proteasomes can also be effectively activated by other mild chemical treatments, such as exposure to low levels of sodium dodecylsulfate (SDS) or NP-14.^[6][7]

The eukaryotic proteasome recognized degradable proteins, including damaged proteins for protein quality control purpose or key regulatory protein components for dynamic biological processes. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. As a component of alpha ring, proteasome subunit alpha type-4 contributes to the formation of heptameric alpha rings and substrate entrance gate. Importantly, this subunit plays an critical role in the assembly of 19S base and 20S. In a study using Saccharomyces cerevisiae proteasome core particle 20S and regulatory particle 19S (similar to human proteasome) base component to delineate the binding process between 19S and 20S, evidences showed that one 19S subunit, Rpt6, can insert its tail into the pocket formed by alpha2 and alpha3 subunit (based on systematic nomenclature), facilitating the complex formation between 20S and 19S base component.^[8]

Clinical significance

The Proteasome and its subunits are of clinical significance for at least two reasons: (1) a compromised complex assembly or a dysfunctional proteasome can be associated with the underlying pathophysiology of specific diseases, and (2) they can be exploited as drug targets for therapeutic interventions. More recently, more effort has been made to consider the proteasome for the development of novel diagnostic markers and strategies. An improved and comprehensive understanding of the pathophysiology of the proteasome should lead to clinical applications in the future.

The proteasomes form a pivotal component for the Ubiquitin-Proteasome System (UPS) ^[9] and corresponding cellular Protein Quality Control (PQC). Protein ubiquitination and subsequent proteolysis and degradation by the proteasome are important mechanisms in the regulation of the cell cycle, cell growth and differentiation, gene transcription, signal transduction and apoptosis.^[10] Subsequently, a compromised proteasome complex assembly and function lead to reduced proteolytic activities and the accumulation of damaged or misfolded protein species. Such protein accumulation may contribute to the pathogenesis and phenotypic characteristics in neurodegenerative diseases,^[11][12] cardiovascular diseases,^[13][14][15] inflammatory responses and autoimmune diseases,^[16] and systemic DNA damage responses leading to malignancies.^[17]

Several experimental and clinical studies have indicated that aberrations and deregulations of the UPS contribute to the pathogenesis of several neurodegenerative and myodegenerative disorders, including Alzheimer's disease,^[18] Parkinson's disease^[19] and Pick's disease,^[20] Amyotrophic lateral sclerosis (ALS),^[20] Huntington's disease,^[19] Creutzfeldt-Jacob disease,^[21] and motor neuron diseases, polyglutamine (PolyQ) diseases, Muscular dystrophies^[22] and several rare forms of neurodegenerative diseases associated with dementia.^[23] As part of the Ubiquitin-Proteasome System (UPS), the proteasome maintains cardiac protein homeostasis and thus plays a significant role in cardiac Ischemic injury,^[24] ventricular hypertrophy^[25] and Heart failure.^[26] Additionally, evidence is accumulating that the UPS plays an essential role in malignant transformation. UPS proteolysis plays a major role in responses of cancer cells to stimulatory signals that are critical for the development of cancer. Accordingly, gene expression by degradation of transcription factors, such as p53, c-Jun, c-Fos, NF-κB, c-Myc, HIF-1α, MATα2, STAT3, sterol-regulated element-binding proteins and androgen receptors are all controlled by the UPS and thus involved in the development of various malignancies.^[27] Moreover, the UPS regulates the degradation of tumor suppressor gene products such as adenomatous polyposis coli (APC) in colorectal cancer, retinoblastoma (Rb). and von Hippel-Lindau tumor suppressor (VHL), as well as a number of proto-oncogenes (Raf, Myc, Myb, Rel, Src, Mos, Abl).The UPS is also involved in the regulation of inflammatory responses. This activity is usually attributed to the role of proteasomes in the activation of NF-κB which further regulates the expression of pro inflammatory cytokines such as TNF-α, IL-β, IL-8, adhesion molecules (ICAM-1, VCAM-1, P selectine) and prostaglandins and nitric oxide (NO).^[28] Additionally, the UPS also plays a role in inflammatory responses as regulators of leukocyte proliferation, mainly through proteolysis of cyclines and the degradation of CDK inhibitors.^[29] Lastly, autoimmune disease patients with SLE, Sjogren's syndrome and rheumatoid arthritis (RA) predominantly exhibit circulating proteasomes which can be applied as clinical biomarkers.^[30]

As genetic factors play an crucial role in the predisposition to cancer, genome-wide association studies (GWAS) have linked the chromosome 15q25.1 locus to the susceptibility of lung cancer and implicated the proteasome subunit alpha type-4 (PMSA4) as a candidate gene. A case-control study in lung cancer patients and controls in the Chinese Han population was investigated and suggested an association between PSMA4 and lung cancer.^[31] Furthermore, PMSA4 has also been implicated to be involved in the pathogenesis of ankylosing spondylitis (AS) and may therefore be a potential biomarker for clinical applications in AS.^[32]

Interactions

PSMA4 has been shown to interact with PLK1.^[33]

References

Further reading

PDB gallery 1iru: Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution