Mothers against decapentaplegic homolog 4

SMAD family member 4
PDB rendering based on 1dd1.
Available structures PDB Ortholog search: PDBe, RCSB List of PDB id codes 1DD1​, 1G88​, 1MR1​, 1U7F​, 1U7V​, 1YGS​
Identifiers
Symbols	SMAD4 ; DPC4; JIP; MADH4; MYHRS
External IDs	OMIM: 600993 MGI: 894293 HomoloGene: 31310 GeneCards: SMAD4 Gene
Gene ontology Molecular function • RNA polymerase II core promoter proximal region sequence-specific DNA binding • core promoter proximal region sequence-specific DNA binding • transcription factor activity, protein binding • transcription factor activity, RNA polymerase II transcription factor binding • transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding • RNA polymerase II transcription factor binding • DNA binding • chromatin binding • transcription factor activity, sequence-specific DNA binding • protein binding • collagen binding • transforming growth factor beta receptor, common-partner cytoplasmic mediator activity • identical protein binding • protein homodimerization activity • sequence-specific DNA binding • transcription regulatory region DNA binding • metal ion binding • protein heterodimerization activity • I-SMAD binding • R-SMAD binding Cellular component • nuclear chromatin • nucleus • nucleoplasm • transcription factor complex • cytoplasm • centrosome • cytosol • activin responsive factor complex • SMAD protein complex Biological process • negative regulation of transcription from RNA polymerase II promoter • branching involved in ureteric bud morphogenesis • response to hypoxia • in utero embryonic development • gastrulation with mouth forming second • atrioventricular valve formation • epithelial to mesenchymal transition involved in endocardial cushion formation • positive regulation of cell proliferation involved in heart valve morphogenesis • cardiac septum development • brainstem development • transcription, DNA-templated • transcription initiation from RNA polymerase II promoter • cellular iron ion homeostasis • transforming growth factor beta receptor signaling pathway • SMAD protein complex assembly • axon guidance • endoderm development • mesoderm development • cell proliferation • negative regulation of cell proliferation • gene expression • positive regulation of epithelial to mesenchymal transition • positive regulation of pathway-restricted SMAD protein phosphorylation • neural crest cell differentiation • regulation of transforming growth factor beta receptor signaling pathway • negative regulation of cell growth • BMP signaling pathway • positive regulation of transforming growth factor beta receptor signaling pathway • positive regulation of BMP signaling pathway • somite rostral/caudal axis specification • regulation of transforming growth factor beta2 production • somatic stem cell maintenance • intracellular signal transduction • atrioventricular canal development • endothelial cell activation • negative regulation of protein catabolic process • embryonic digit morphogenesis • negative regulation of transcription, DNA-templated • positive regulation of transcription, DNA-templated • positive regulation of transcription from RNA polymerase II promoter • developmental growth • neuron fate commitment • sebaceous gland development • formation of anatomical boundary • regulation of binding • regulation of hair follicle development • palate development • positive regulation of SMAD protein import into nucleus • SMAD protein signal transduction • negative regulation of cell death • endocardial cell differentiation • response to transforming growth factor beta • cellular response to BMP stimulus • metanephric mesenchyme morphogenesis • nephrogenic mesenchyme morphogenesis • positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus Sources: Amigo / QuickGO
RNA expression pattern
More reference expression data
Orthologs
Species	Human	Mouse
Entrez	4089	17128
Ensembl	ENSG00000141646	ENSMUSG00000024515
UniProt	Q13485	P97471
RefSeq (mRNA)	NM_005359	NM_008540
RefSeq (protein)	NP_005350	NP_032566
Location (UCSC)	Chr 18: 51.03 – 51.09 Mb	Chr 18: 73.64 – 73.7 Mb
PubMed search

SMAD 4, also called SMAD family member n°4 or Mothers against decapentaplegic homolog 4, is a protein involved in cell signaling in mammals. It belongs to the proteins of the SMAD family.

SMAD 4 participates in chain reactions inside cells where it interacts with other members of the SMAD family such as SMAD2 or SMAD3. SMAD 4 forms with SMAD 3 a complex which can bind to DNA and modify the expression of several genes related to cellular activities such as proliferation or differentiation.^[1] The complex SMAD 3-SMAD 4 is therefore a transcription factor. Intracellular reactions involving SMAD 4 are triggered by the binding, on the surface of the cells, of growth factors from the TGFβ family. The sequence of intracellular reactions involving SMADS is called the SMAD pathway or the transforming growth factor beta (TGF-β) pathway since the sequence starts with the recognition of TGF-β by cells.

SMAD 4 belongs to the co-SMAD group, the second class of the SMAD family. SMAD 4 is the only known co-SMAD in mammals. It also belongs to the Darwin family of proteins that modulate members of the TGFβ protein superfamily, a family of proteins that all play a role in the regulation of cellular responses. Mammalian SMAD 4 is a homolog of the Drosophila protein "Mothers against decapentaplegic" or MAD.

Structure

SMAD family member 4 is a 552 amino-acid polypeptide with a molecular weight of 60 439 daltons. This protein is composed of only one chain of amino acids.

SMAD 4 is always coded in mammals by a gene located on chromosome 18. In humans, the protein is coded by the SMAD 4 gene, which is located in the region 21.1 of chromosome 18.^[2] The human gene contains 54 829 base pairs and is located from pair n° 51,030,212 to pair 51,085,041.^[3]

Pattern of the chromosome 18 in Homo sapiens. The SMAD 4 gene is located on the long arm of the chromosome, at locus 21.1. This locus corresponds to the black stripe between the regions 12.3 and 21.2.

SMAD 4 has a tri-dimensional structure and two functional domains known as MH1 and MH2. The letters M and H stand for MAD Homology and refer to the similarity between mammals SMAD 4 and the Drosophilia protein Mothers against decapentaplegic (MAD).^[4]

SMAD 4 is composed of three major domains, including MH1 (up), MH2 (down) and a linking domain (right).

The MH1 domain, corresponding to the N-terminus, contains amino-acids with physical and chemical properties that give SMAD 4 specific DNA-binding properties. This region recognizes a specific DNA sequence composed of eight nucleotides: G-T-C-T-A-G-A-C.^[5]

The sequence is also recognized by SMAD 3, which forms a protein complex with SMAD 4 in the cytoplasm of mammalian cells. It is therefore sometimes called the "consensus sequence" but is mostly known as Smad-binding DNA element (SBE). The MH1 domain facilitates the binding of SMAD 4 to receptors such as SMAD 2 and SMAD 3 which belong to the R-SMAD group (first class of the SMAD family) by interacting with their phosphorylated MH2 domain.

The MH2 domain, corresponding to the C-terminus, is responsible for receptor recognition, DNA binding and association with other SMADs. Just as the MH1 domain interacts with the R-SMADS MH2 domain, the SMAD 4 MH2 domain directly interacts with their MH1 domain.^[4] SMAD 4 can therefore form with other SMADS heterodimers and heterotrimers.

Nomenclature and origin of name

SMADs are highly conserved across species, especially in the N terminal MH1 domain and the C terminal MH2 domain. The SMAD proteins are homologs of both the Drosophila protein MAD and the C. elegans protein SMA. The name is a combination of the two. During Drosophila research, it was found that a mutation in the gene MAD in the mother repressed the gene decapentaplegic in the embryo. The phrase "Mothers against" was added, since mothers often form organizations opposing various issues, e.g. Mothers Against Drunk Driving (MADD), reflecting "the maternal-effect enhancement of dpp".^[6]

SMAD 4 is also known as DPC4, JIP or MADH4.

Function and action mechanism

SMAD 4 is a protein defined as an essential effector in the SMAD pathway. SMAD 4 serves as a mediator between extracellular growth factors from the TGFβ family and genes inside the cell nucleus. The abbreviation co in co-SMAD stands for common mediator. SMAD 4 is also defined as a signal transducer.

In the TGF-β pathway, TGF-β dimers are recognized by a transmembrane receptor, known as type II receptor. Once the type II receptor is activated by the binding of TGF-β, it phosphorylates a type I receptor. Type I receptor is also a cell surface receptor. This receptor then phosphorylates intracellular receptor regulated SMADS (R-SMADS) such as SMAD 2 or SMAD 3. The phosphorylated R-SMADS then bind to SMAD 4. The R-SMADs-SMAD 4 association is a heteromeric complex. This complex is going to move from the cytoplasm to the nucleus: it is the translocation. SMAD4 may form heterotrimeric, heterohexameric or heterodimeric complexes with R-SMADS.

Smad4 is a substrate of the Erk/MAPK kinase ^[7] and GSK3.^[8] The FGF (Fibroblast Growth Factor) pathway stimulation leads to Smad4 phosphorylation by Erk of the canonical MAPK site located at Threonine 277. This phosphorylation event has a dual effect on Smad4 activity. First, it allows Smad4 to reach its peak of transcriptional activity by activating a growth factor-regulated transcription activation domain located in the Smad4 linker region, SAD (Smad-Activation Domain).^[9] Second, MAPK primes Smad4 for GSK3-mediated phosphorylations that cause transcriptional inhibition and also generate a phosphodegron used as a docking site by the ubiquitin E3 ligase Beta-transducin Repeat Containing (beta-TrCP) that polyubiquitinates Smad4 and targets it for degradation in the proteasome.^[10] Smad4 GSK3 phosphorylations have been proposed to regulate the protein stability during pancreatic and colon cancer progression.^[11]

In the nucleus the heteromeric complex binds promoters and interact with transcriptional activators. SMAD3/SMAD4 complexes can directly bind the SBE. These associations are weak and require additional transcription factors such as members of the AP-1 family, TFE3 and FoxG1 to regulate gene expression.^[12]

Many TGFβ ligands use this pathway and subsequently SMAD4 is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and the cell cycle.

Clinical significance

Genetic experiments such as gene knockout (KO), which consist in modifying or inactivating a gene, can be carried out in order to see the effects of a dysfunctional SMAD 4 on the study organism. Experiments are often conducted in the house mouse (Mus musculus).

It has been shown that, in mouse KO of SMAD4, the granulosa cells, which secrete hormones and growth factors during the oocyte development, undergo premature luteinization and express lower levels of follicle-stimulating hormone receptors (FSHR) and higher levels of luteinizing hormone receptors (LHR). This may be due in part to impairment of bone morphogenetic protein-7 effects as BMP-7 uses the SMAD4 signaling pathway.^[13][14]

Deletions in the genes coding for SMAD1 and SMAD5 have also been linked to metastasic granulosa cell tumors in mice.^[15]

SMAD4, is often found mutated in many cancers. The mutation can be inherited or acquired during an individual’s lifetime. If inherited, the mutation affects both somatic and sexual cells. If the SMAD 4 mutation is acquired, it will only exist in certain somatic cells. Indeed, SMAD 4 is not synthesized by all cells. The protein is present in skin, pancreatic, colon, uterus and epithelial cells. It is also produced by fibroblasts. The functional SMAD 4 participates in the regulation of the TGF-β signal transduction pathway, which negatively regulates growth of epithelial cells and the extracellular matrix (ECM). When the structure of SMAD 4 is altered, expression of the genes involved in cell growth is no longer regulated and cell proliferation can go on without any inhibition. The important number of cell divisions leads to the forming of tumors and then to multiploid colorectal cancer and pancreatic carcinoma. It is found inactivated in at least 50% of pancreatic cancers.^[16]

Somatic mutations found in human cancers of the MH1 domain of SMAD 4 have been shown to inhibit the DNA-binding function of this domain.

SMAD 4 is also found mutated in the autosomal dominant disease juvenile polyposis syndrome (JPS). JPS is characterized by hamartomatous polyps in the gastrointestinal (GI) tract. These polyps are usually benign, however they are at greater risk of developing gastrointestinal cancers, in particular colon cancer. Around 60 mutations causing JPS have been identified. They have been linked to the production of a smaller SMAD 4, with missing domains that prevent the protein from binding to R-SMADS and forming heteromeric complexes.^[3]

Mutations in SMAD4 (mostly substitutions) can cause Myhre syndrome , a rare inherited disorder characterized by mental disabilities, short stature, unusual facial features, and various bone abnormalities.^[17][18]

References

Further reading

External links

• GeneReviews/NCBI/NIH/UW entry on Hereditary Hemorrhagic Telangiectasia
• GeneReviews/NCBI/NIH/UW entry on Juvenile Polyposis Syndrome
• SMAD4 gene variant database