PhenomicDB
PhenomicDB is a free phenotype oriented database. It contains data for some of the main model organisms such as Homo sapiens, Mus musculus, Drosophila melanogaster, and others. PhenomicDB merges and structures phenotypic data from various public sources: WormBase, FlyBase, NCBI Gene, MGI, and ZFIN using clustering algorithms.
Further reading
- Groth P, Kalev I, Kirov I, Traikov B, Leser U, Weiss B (August 2010). "Phenoclustering: online mining of cross-species phenotypes". Bioinformatics 26 (15): 1924–5. doi:10.1093/bioinformatics/btq311. PMC 2905556. PMID 20562418. Retrieved 2011-03-17.
- Groth P, Pavlova N, Kalev I, Tonov S, Georgiev G, Pohlenz HD, Weiss B (January 2007). "PhenomicDB: a new cross-species genotype/phenotype resource". Nucleic Acids Research 35 (Database issue): D696–9. doi:10.1093/nar/gkl662. PMC 1781118. PMID 16982638. Retrieved 2011-03-17.
- Kahraman A, Avramov A, Nashev LG, Popov D, Ternes R, Pohlenz HD, Weiss B (February 2005). "PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics". Bioinformatics 21 (3): 418–20. doi:10.1093/bioinformatics/bti010. PMID 15374875. Retrieved 2011-03-17.
- Groth, Philip; Weiss, Bertram (2006). "Phenotype Data: A Neglected Resource in Biomedical Research?". Current Bioinformatics 1 (3): 347–358. doi:10.2174/157489306777828008.
- Groth, Philip; Weiss, Bertram; Pohlenz, Hans-Dieter; Leser, Ulf (2008). "Mining phenotypes for gene function prediction". BMC Bioinformatics 9: 136. doi:10.1186/1471-2105-9-136.