MTV Pilipinas for Favorite Indie Video
The following is a list of MTV Pilipinas winners for Favorite Indie Video. While MTV Pilipinas was first organized in 2001, the said award category was later introduced in 2004.
| Year | Artist | Video |
|---|---|---|
| 2006 | MOJOFLY | Tumatakbo |
| 2005 | Drip | Song No. 9 |
| 2004 | The Late Isabel | Doll's Head |