List of sequenced fungi genomes

This list of sequenced fungi genomes contains all the fungal species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.

This list is incomplete; you can help by expanding it.

Ascomycota

Ascomycetes

Dothideomycetes

Eurotiomycetes

Leotiomycetes

Pezizomycetes

Saccharomycetes

Schizosaccharomycetes

Sordariomycetes

Basidiomycota

Agaricomycetes

Pucciniomycetes (formerly Urediniomycetes)

Tremellomycetes

Ustilaginomycetes

Wallemiomycetes

Chytridiomycota

Chytridiomycota is probably a polyphyletic group[100][101] that includes fungi with spores that have flagella (zoospores) and are a sister group to more advanced land fungi that lack flagella. Several chytrid species are pathogens, but have not had their genomes sequenced yet.

Microsporidia

Zygomycota

Zygomycota is probably a polyphyletic group[115] that contains basal fungal lineages.

See also

External links

References

  1. Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D et al. (2003). "The genome sequence of the filamentous fungus Neurospora crassa". Nature 422 (6934): 859–68. doi:10.1038/nature01554. PMID 12712197.
  2. JGI entry
  3. Gostinčar, Cene; Ohm, Robin A.; Kogej, Tina; Sonjak, Silva; Turk, Martina; Zajc, Janja; Zalar, Polona; Grube, Martin; Sun, Hui (2014-07-01). "Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species". BMC Genomics (in English) 15 (1): 549. doi:10.1186/1471-2164-15-549. ISSN 1471-2164. PMID 24984952. Retrieved 2015-04-10.
  4. Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C et al. (2013). "Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii". PLoS ONE 8 (8): e71328. Bibcode:2013PLoSO...871328L. doi:10.1371/journal.pone.0071328. PMC 3744574. PMID 23977017. Vancouver style error (help)
  5. Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A et al. (2011). "Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations". Nat Commun 2 (2): 202. Bibcode:2011NatCo...2E.202R. doi:10.1038/ncomms1189. PMC 3105345. PMID 21326234.
  6. "Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina". BMC Genomics 13 (1): 493. 2012. doi:10.1186/1471-2164-13-493. PMC 3477038. PMID 22992219.
  7. JGI entry
  8. Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK et al. (2011). "Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis". PLoS Genet. 7 (6): e1002070. doi:10.1371/journal.pgen.1002070. PMC 3111534. PMID 21695235.
  9. Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW et al. (2007). "Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum". Plant Cell 19 (11): 3347–68. doi:10.1105/tpc.107.052829. PMC 2174895. PMID 18024570.
  10. http://www.diark.org/diark/species_list/Pyrenophora_tritici_repentis_Pt_1C_BFP
  11. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01094
  12. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01787
  13. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01529
  14. 14.0 14.1 Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM et al. (2012). "Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection". MBio 3 (5): e00259–12. doi:10.1128/mBio.00259-12. PMC 3445971. PMID 22951933. Vancouver style error (help)
  15. JGI entry
  16. JGI entry
  17. 17.0 17.1 17.2 Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ et al. (2008). "Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus". PLoS Genet. 4 (4): e1000046. doi:10.1371/journal.pgen.1000046. PMC 2289846. PMID 18404212.
  18. Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J et al. (2005). "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus". Nature 438 (7071): 1151–6. Bibcode:2005Natur.438.1151N. doi:10.1038/nature04332. PMID 16372009.
  19. Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H et al. (2011). "Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu". Eukaryotic Cell 10 (11): 1586–7. doi:10.1128/EC.05224-11. PMC 3209066. PMID 22045919.
  20. Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S et al. (2005). "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae". Nature 438 (7071): 1105–15. Bibcode:2005Natur.438.1105G. doi:10.1038/nature04341. PMID 16372000.
  21. Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ et al. (2007). "Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88". Nat. Biotechnol. 25 (2): 221–31. doi:10.1038/nbt1282. PMID 17259976.
  22. Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G et al. (2005). "Genome sequencing and analysis of Aspergillus oryzae". Nature 438 (7071): 1157–61. doi:10.1038/nature04300. PMID 16372010.
  23. http://www.diark.org/diark/species_list/Aspergillus_terreus_NIH2624
  24. 24.0 24.1 24.2 Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS et al. (2009). "Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives". Genome Res. 19 (10): 1722–31. doi:10.1101/gr.087551.108. PMC 2765278. PMID 19717792.
  25. Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM et al. (2011). "Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis". PLoS Genet. 7 (10): e1002345. doi:10.1371/journal.pgen.1002345. PMC 3203195. PMID 22046142. Vancouver style error (help)
  26. van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ et al. (2008). "Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum". Nat. Biotechnol. 26 (10): 1161–8. doi:10.1038/nbt.1498. PMID 18820685.
  27. 27.0 27.1 Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L et al. (2012). "Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus". BMC Genomics 13: 646. doi:10.1186/1471-2164-13-646. PMC 3532085. PMID 23171342. Vancouver style error (help)
  28. 28.0 28.1 Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM et al. (2008). "The genome sequence of the model ascomycete fungus Podospora anserina". Genome Biol. 9 (5): R77. doi:10.1186/gb-2008-9-5-r77. PMC 2441463. PMID 18460219.
  29. 29.0 29.1 Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A et al. (2011). "Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea". PLoS Genet. 7 (8): e1002230. doi:10.1371/journal.pgen.1002230. PMC 3158057. PMID 21876677.
  30. Youssar L, Grüning BA, Erxleben A, Günther S, Hüttel W (2012). "Genome sequence of the fungus Glarea lozoyensis: the first genome sequence of a species from the Helotiaceae family". Eukaryotic Cell 11 (2): 250. doi:10.1128/EC.05302-11. PMC 3272893. PMID 22302591. Vancouver style error (help)
  31. Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A et al. (2012). "Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides". PLoS Genet. 8 (3): e1002558. doi:10.1371/journal.pgen.1002558. PMC 3291568. PMID 22396667.
  32. Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O et al. (2010). "Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis". Nature 464 (7291): 1033–8. doi:10.1038/nature08867. PMID 20348908.
  33. Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S et al. (2004). "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome". Science 304 (5668): 304–7. Bibcode:2004Sci...304..304D. doi:10.1126/science.1095781. PMID 15001715.
  34. 34.0 34.1 34.2 34.3 34.4 34.5 Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA et al. (2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature 459 (7247): 657–62. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
  35. EBI project page
  36. 36.0 36.1 36.2 36.3 Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I et al. (2004). "Genome evolution in yeasts". Nature 430 (6995): 35–44. Bibcode:2004Natur.430...35D. doi:10.1038/nature02579. PMID 15229592.
  37. Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G (2012). "Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis". PLoS ONE 7 (4): e35750. doi:10.1371/journal.pone.0035750. PMC 3338533. PMID 22563396. Vancouver style error (help)
  38. Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK (2012). "Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234". Eukaryotic Cell 11 (7): 961–2. doi:10.1128/EC.00137-12. PMC 3416502. PMID 22744717.
  39. Piskur J; Ling Z; Marcet-Houben M et al. (2012). "The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties". Int J Food Microbiol.
  40. JGI entry
  41. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01520
  42. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01521
  43. Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P et al. (2009). "Comparative genomics of protoploid Saccharomycetaceae". Genome Res. 19 (10): 1696–709. doi:10.1101/gr.091546.109. PMC 2765284. PMID 19525356.
  44. 44.0 44.1 44.2 44.3 Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J et al. (2003). "Finding functional features in Saccharomyces genomes by phylogenetic footprinting". Science 301 (5629): 71–6. Bibcode:2003Sci...301...71C. doi:10.1126/science.1084337. PMID 12775844.
  45. 45.0 45.1 45.2 45.3 Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH (2011). "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents". Proc. Natl. Acad. Sci. U.S.A. 108 (50): 20024–9. Bibcode:2011PNAS..10820024G. doi:10.1073/pnas.1112808108. PMC 3250169. PMID 22123960. Vancouver style error (help)
  46. 46.0 46.1 46.2 Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES (2003). "Sequencing and comparison of yeast species to identify genes and regulatory elements". Nature 423 (6937): 241–54. Bibcode:2003Natur.423..241K. doi:10.1038/nature01644. PMID 12748633.
  47. 47.0 47.1 47.2 Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB et al. (2011). "The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus". G3 (Bethesda) 1 (1): 11–25. doi:10.1534/g3.111.000273. PMC 3276118. PMID 22384314.
  48. Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA et al. (2013). "High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome". BMC Genomics 14 (1): 69. doi:10.1186/1471-2164-14-69. PMC 3599269. PMID 23368932. Vancouver style error (help)
  49. Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OV, Missawa SK et al. (2009). "Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production". Genome Res. 19 (12): 2258–70. doi:10.1101/gr.091777.109. PMC 2792172. PMID 19812109.
  50. Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H et al. (1996). "Life with 6000 genes". Science 274 (5287): 546, 563–7. Bibcode:1996Sci...274..546G. doi:10.1126/science.274.5287.546. PMID 8849441.
  51. Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T et al. (2010). "Genotype to phenotype: a complex problem". Science 328 (5977): 469. Bibcode:2010Sci...328..469D. doi:10.1126/science.1189015. PMID 20413493.
  52. Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA et al. (2009). "Population genomics of domestic and wild yeasts". Nature 458 (7236): 337–41. Bibcode:2009Natur.458..337L. doi:10.1038/nature07743. PMC 2659681. PMID 19212322.
  53. Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, Nakamura N et al. (2009). "Genome sequence of the lager brewing yeast, an interspecies hybrid". DNA Res. 16 (2): 115–29. doi:10.1093/dnares/dsp003. PMC 2673734. PMID 19261625.
  54. Jeffries TW, Grigoriev IV, Grimwood J, Laplaza JM, Aerts A, Salamov A et al. (2007). "Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis". Nat. Biotechnol. 25 (3): 319–26. doi:10.1038/nbt1290. PMID 17334359.
  55. JGI entry
  56. Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH (2007). "Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication". Proc. Natl. Acad. Sci. U.S.A. 104 (20): 8397–402. Bibcode:2007PNAS..104.8397S. doi:10.1073/pnas.0608218104. PMC 1895961. PMID 17494770.
  57. EBI project page
  58. Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N et al. (2011). "Comparative functional genomics of the fission yeasts". Science 332 (6032): 930–6. Bibcode:2011Sci...332..930R. doi:10.1126/science.1203357. PMC 3131103. PMID 21511999.
  59. Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A et al. (2002). "The genome sequence of Schizosaccharomyces pombe". Nature 415 (6874): 871–80. doi:10.1038/nature724. PMID 11859360.
  60. 60.0 60.1 O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF et al. (2012). "Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses". Nat. Genet. 44 (9): 1060–5. doi:10.1038/ng.2372. PMID 22885923.
  61. Broad institute entry
  62. 62.0 62.1 Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A et al. (2010). "Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium". Nature 464 (7287): 367–73. doi:10.1038/nature08850. PMC 3048781. PMID 20237561.
  63. EBI project page
  64. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01519
  65. UBC Press Release
  66. Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ et al. (2005). "The genome sequence of the rice blast fungus Magnaporthe grisea". Nature 434 (7036): 980–6. doi:10.1038/nature03449. PMID 15846337.
  67. Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y et al. (2011). "Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum". PLoS Genet. 7 (1): e1001264. doi:10.1371/journal.pgen.1001264. PMC 3017113. PMID 21253567.
  68. Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J et al. (2009). "The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion". PLoS Genet. 5 (8): e1000618. doi:10.1371/journal.pgen.1000618. PMC 2725324. PMID 19714214.
  69. JGI entry
  70. JGI entry
  71. JGI entry
  72. 72.0 72.1 Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE et al. (2008). "Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)". Nat. Biotechnol. 26 (5): 553–60. doi:10.1038/nbt1403. PMID 18454138.
  73. JGI entry
  74. http://www.diark.org/diark/species_list/Verticillium_albo_atrum_VaMs_102
  75. JGI entry
  76. 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 76.10 76.11 Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B et al. (2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science 336 (6089): 1715–9. doi:10.1126/science.1221748. PMID 22745431.
  77. Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M et al. (2010). "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)". Proc. Natl. Acad. Sci. U.S.A. 107 (26): 11889–94. doi:10.1073/pnas.1003391107. PMC 2900686. PMID 20547848. Vancouver style error (help)
  78. Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV (2012). "Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa". Appl. Environ. Microbiol. 78 (7): 2272–81. doi:10.1128/AEM.06745-11. PMC 3302605. PMID 22247176.
  79. JGI entry
  80. Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F et al. (2008). "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis". Nature 452 (7183): 88–92. Bibcode:2008Natur.452...88M. doi:10.1038/nature06556. PMID 18322534. Vancouver style error (help)
  81. Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J et al. (2008). "A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao". BMC Genomics 9: 548. doi:10.1186/1471-2164-9-548. PMC 2644716. PMID 19019209.
  82. Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J et al. (2004). "Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78". Nat. Biotechnol. 22 (6): 695–700. doi:10.1038/nbt967. PMID 15122302.
  83. Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D et al. (2011). "Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica". PLoS Pathog. 7 (10): e1002290. doi:10.1371/journal.ppat.1002290. PMC 3192844. PMID 22022265. Vancouver style error (help)
  84. JGI entry
  85. JGI entry
  86. Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE et al. (2010). "Genome sequence of the model mushroom Schizophyllum commune". Nat. Biotechnol. 28 (9): 957–63. doi:10.1038/nbt.1643. PMID 20622885.
  87. Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A et al. (2011). "The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi". Science 333 (6043): 762–5. doi:10.1126/science.1205411. PMID 21764756.
  88. JGI entry
  89. Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C et al. (2011). "Obligate biotrophy features unraveled by the genomic analysis of rust fungi". Proc. Natl. Acad. Sci. U.S.A. 108 (22): 9166–71. doi:10.1073/pnas.1019315108. PMC 3107277. PMID 21536894.
  90. 90.0 90.1 Broad Institute
  91. JGI entry
  92. JGI entry
  93. Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D et al. (2005). "The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans". Science 307 (5713): 1321–4. doi:10.1126/science.1103773. PMC 3520129. PMID 15653466.
  94. http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01114
  95. 95.0 95.1 Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE et al. (2007). "Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens". Proc. Natl. Acad. Sci. U.S.A. 104 (47): 18730–5. Bibcode:2007PNAS..10418730X. doi:10.1073/pnas.0706756104. PMC 2141845. PMID 18000048.
  96. Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G et al. (2010). "Pathogenicity determinants in smut fungi revealed by genome comparison". Science 330 (6010): 1546–8. Bibcode:2010Sci...330.1546S. doi:10.1126/science.1195330. PMID 21148393. Vancouver style error (help)
  97. Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ et al. (2006). "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis". Nature 444 (7115): 97–101. Bibcode:2006Natur.444...97K. doi:10.1038/nature05248. PMID 17080091. Vancouver style error (help)
  98. Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C et al. (2013). "Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent". BMC Genomics 14: 617. doi:10.1186/1471-2164-14-617. PMC 3849046. PMID 24034603. Vancouver style error (help)
  99. Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM et al. (2012). "The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction". Fungal Genet. Biol. 49 (3): 217–26. doi:10.1016/j.fgb.2012.01.007. PMID 22326418.
  100. James TY, Porter D, Leander CA, Vilgalys R, Longcore JE; Porter (2000). "Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics". Can. J. Bot. 78 (3): 336–350. doi:10.1139/cjb-78-3-336.
  101. James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ et al. (2006). "Reconstructing the early evolution of Fungi using a six-gene phylogeny". Nature 443 (7113): 818–22. Bibcode:2006Natur.443..818J. doi:10.1038/nature05110. PMID 17051209.
  102. Batrachochytrium dendrobatidis at BROAD
  103. Batrachochytrium dendrobatidis at JGI
  104. Spizellomyces punctatus at BROAD: Origins of Multicellularity Database
  105. Allomyces macrogynus at BROAD: Origins of Multicellularity Database
  106. Gonapodya prolifera at JGI
  107. Piromyces sp. at JGI
  108. Catenaria anguillulae at JGI
  109. Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G et al. (2001). "Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi". Nature 414 (6862): 450–3. Bibcode:2001Natur.414..450K. doi:10.1038/35106579. PMID 11719806. Vancouver style error (help)
  110. Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ (2010). "The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis". Nat Commun 1 (6): 77. doi:10.1038/ncomms1082. PMID 20865802.
  111. Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N et al. (2009). "Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi". PLoS Pathog. 5 (1): e1000261. doi:10.1371/journal.ppat.1000261 (inactive 2015-01-14). PMC 2607024. PMID 19132089.
  112. Keeling PJ, Corradi N, Morrison HG, Haag KL, Ebert D, Weiss LM et al. (2010). "The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism". Genome Biol Evol 2: 304–9. doi:10.1093/gbe/evq022. PMC 2942035. PMID 20624735.
  113. Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B et al. (2009). "Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees". PLoS Pathog. 5 (6): e1000466. doi:10.1371/journal.ppat.1000466. PMC 2685015. PMID 19503607.
  114. Corradi N, Haag KL, Pombert JF, Ebert D, Keeling PJ (2009). "Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions". Genome Biol. 10 (10): R106. doi:10.1186/gb-2009-10-10-r106. PMC 2784321. PMID 19807911.
  115. Tanabe Y, Saikawa M, Watanabe MM, Sugiyama J (2004). "Molecular phylogeny of Zygomycota based on EF-1alpha and RPB1 sequences: limitations and utility of alternative markers to rDNA". Mol. Phylogenet. Evol. 30 (2): 438–49. doi:10.1016/s1055-7903(03)00185-4. PMID 14715234.
  116. Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M et al. (2009). "Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication". PLoS Genet. 5 (7): e1000549. doi:10.1371/journal.pgen.1000549. PMC 2699053. PMID 19578406.
  117. Wang L, Chen W, Feng Y, Ren Y, Gu Z, Chen H et al. (2011). "Genome characterization of the oleaginous fungus Mortierella alpina". PLoS ONE 6 (12): e28319. Bibcode:2011PLoSO...628319W. doi:10.1371/journal.pone.0028319. PMC 3234268. PMID 22174787.