List of neuroimaging software
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site.
- 3D Slicer (from Harvard, multi-purposes processing software including
- aidScans, tumor volume estimation
- Amira 3D visualization and analysis software
- Analysis of Functional NeuroImages (AFNI)
- Analyze4D: A matlab GUI based tool designed for advanced ROI time course analysis and visualization(from Donders Institute)
- Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic.
- Bioimage Suite.
- BrainMagix
- BESA (Brain Electrical Source Analysis)
- Bergen EEG-fMRI Toolbox plugin for EEGLab (remove fMRI gradients from simultaneous EEG-fMRI recordings)
- Brain Image Analysis Package
- BrainSuite, a collection of tools for extraction of cerebral cortex, segmentation and labeling brain volumes and surfaces, and distortion correction and coregistration of diffusion data with structural MRIs.
- BrainVISA
- BrainVoyager
- CamBA
- Camino Open-source toolkit for diffusion MRI.
- Caret Van Essen Lab, Washington University in St. Louis
- COINS (Collaborative Neuroimaging and Informatics Suite) developed by The Mind Research Network is a one stop neuroimaging/science/psychology research management toolsuite.
- CONN (functional connectivity toolbox)
- ExploreDTI [1] is a graphical toolbox, for exploratory diffusion (tensor) MRI and fiber tractography.
- Fiasco/FIAT (from CMU)
- FMRIB Software Library (FSL)
- FMRLAB
- FreeSurfer
- ISAS (Ictal-Interictal SPECT Analysis by SPM)
- Leipzig Image Processing and Statistical Inference Algorithms (LIPSIA)
- LONI Pipeline, Laboratory of Neuro Imaging, UCLA
- Mango,[2] developed at the Research Imaging Center, University of Texas Health Science Center at San Antonio
- Medical Image Processing, Analysis, and Visualization software (MIPAV) , developed by BIRSS at the National Institutes of Health
- MNI MINC McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University
- MRIcro
- MRIcron (Next generation of MRIcro)
- MRtrix, software for performing and analysing diffusion-weighted MRI white matter tractography in the presence of crossing fibres, using Constrained Spherical Deconvolution
- mrVista (from Stanford)
- MRVision
- Net Station
- Neuroimaging software installation support
- NeuroLens
- NIfTI
- NITRC The Neuroimaging Informatics Tools and Resources Clearinghouse. An NIH funded database of neuroimaging tools
- nordicICE
- Olea Medical: PerfScape & NeuroScape
- Prism suite
- PyMVPA
- SHAring NeurOImaging Resources (Shanoir) is a neuroinformatics platform designed to share, archive, search and visualize neuroimaging data.
- Signed differential mapping (SDM)
- Statistical parametric mapping (SPM)
- Stimulate (One of the earliest fMRI software package from CMRR at University of Minnesota)
- Tortoise[3] Tolerably Obsessive Registration and Tensor Optimization Indolent Software Ensemble. A software package is for processing diffusion MRI data
References
- ↑ Leemans A, Jeurissen B, Sijbers J, and Jones DK. ExploreDTI: a graphical toolbox for processing, analyzing, and visualizing diffusion MR data. In: 17th Annual Meeting of Intl Soc Mag Reson Med, p. 3537, Hawaii, USA, 2009
- ↑ Sadigh-Eteghad S, Majdi A, Farhoudi M, Talebi M, Mahmoudi J (2014). "Different patterns of brain activation in normal aging and Alzheimer's disease from cognitional sight: meta analysis using activation likelihood estimation". Journal of the Neurological Sciences 343 (1): 159–66. doi:10.1016/j.jns.2014.05.066. PMID 24950901.
- ↑ C. Pierpaoli, L. Walker, M. O. Irfanoglu, A. Barnett, P. Basser, L-C. Chang, C. Koay, S. Pajevic, G. Rohde, J. Sarlls, and M. Wu, 2010, TORTOISE: an integrated software package for processing of diffusion MRI data, ISMRM 18th annual meeting, Stockholm, Sweden, #1597