| Name | Type | IUCN | Area km2 | Area sq mi | Region | Year Gazetted |
| Bwindi Impenetrable | National Park | II | 327 | 126.3 | | |
| Kibale | National Park | II | 766 | 295.8 | | |
| Kidepo Valley | National Park | II | 1430 | 552.1 | | |
| Lake Mburo | National Park | II | 370 | 142.9 | | |
| Mgahinga Gorilla | National Park | II | 38 | 14.7 | | |
| Mount Elgon | National Park | II | 1110 | 428.6 | | |
| Murchison Falls | National Park | II | 3877 | 1496.9 | | |
| Queen Elizabeth | National Park | II | 2056 | 793.8 | | |
| Rwenzori Mountains | National Park | II | 995 | 384.2 | | |
| Semuliki | National Park | II | 220 | 84.9 | | |
| Ajai | Wildlife Reserve | III | 148 | 57.1 | | |
| Bokora Corridor | Wildlife Reserve | III | 1816 | 701.2 | | |
| Bugungu | Wildlife Reserve | III | 473 | 182.6 | | |
| Kabwoya | Wildlife Reserve | III | 87 | 33.6 | | |
| Karuma | Wildlife Reserve | III | 675 | 260.6 | | |
| Katonga | Wildlife Reserve | III | 210 | 81.1 | | |
| Kigezi | Wildlife Reserve | III | 265 | 102.3 | | |
| Kyambura | Wildlife Reserve | III | 154 | 59.5 | | |
| Lomunga | Wildlife Reserve | VI | 184 | 71.0 | | |
| East Madi | Wildlife Reserve | III | 829 | 320.1 | | |
| Matheniko | Wildlife Reserve | III | 1757 | 678.4 | | |
| Pian Upe | Wildlife Reserve | III | 2304 | 889.6 | | |
| Toro-Semliki | Wildlife Reserve | III | 542 | 209.3 | | |
| Buhuka | Controlled Hunting Area | - | 18 | 6.8 | | |
| Central Karamoja (Napak) | Controlled Hunting Area | - | 225 | 86.7 | | |
| North Karamoja | Controlled Hunting Area | - | 10793 | 4167.3 | | |
| South Karamoja | Controlled Hunting Area | - | 7900 | 3050.1 | | |
| Karuma Falls | Controlled Hunting Area | - | 241 | 93.1 | | |
| Katonga | Controlled Hunting Area | - | 2299 | 887.5 | | |
| Lipan | Controlled Hunting Area | - | 899 | 346.9 | | |
| West Madi | Controlled Hunting Area | - | 831 | 320.9 | | |
| Sebei | Controlled Hunting Area | - | 2535 | 978.7 | | |
| Semliki | Controlled Hunting Area | - | 504 | 194.6 | | |
| East Teso | Controlled Hunting Area | - | 504 | 194.6 | | |
| North Teso | Controlled Hunting Area | - | 1240 | 478.8 | | |
| Amudat | Community Wildlife Management Area | VI | 2053 | 792.7 | | |
| Iriri | Community Wildlife Management Area | VI | 1046 | 403.9 | | |
| Kaiso Tonya | Community Wildlife Management Area | VI | 107 | 41.3 | | |
| Karenga | Community Wildlife Management Area | VI | 956 | 369.1 | | |
| Rwengara | Community Wildlife Management Area | VI | 76 | 29.3 | | |
| Entebbe | Wildlife Sanctuary | VI | 51 | 19.8 | | |
| Jinja | Wildlife Sanctuary | VI | 10 | 3.9 | | |
| Kazinga | Wildlife Sanctuary | VI | 17 | 6.8 | | |
| Malawa | Wildlife Sanctuary | VI | 7 | 2.7 | | |
| Mount Kei | Wildlife Sanctuary | VI | 416 | 160.7 | | |
| Ngama Island | Wildlife Sanctuary | | | 0.0 | | |
| Ntoroko-Kanara | Wildlife Sanctuary | VI | 3 | 1.0 | | |
| Nyaburogo | Wildlife Sanctuary | VI | 5 | 2.0 | | |
| Otze Forest | Wildlife Sanctuary | VI | 0 | 0.2 | | |
| UWEC | Wildlife Sanctuary | | | | | |
| Ziwa Rhino | Wildlife Sanctuary | | | | | |
| Lake Opeta | Ramsar Site | | | | | |
| Lake Bisina | Ramsar Site | | | | | |
| Lake Mburo | Ramsar Site | | | | | |
| Lake Nakuwa | Ramsar Site | | | | | |
| Lutembe Bay | Ramsar Site | | | | | |
| Mabamba Bay | Ramsar Site | | | | | |
| Murchison Falls | Ramsar Site | | | | | |
| Nabajjuzi | Ramsar Site | | | | | |
| Sango Bay | Ramsar Site | | | | | |
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