Sorbitol dehydrogenase

Sorbitol dehydrogenase (or SDH) is a protein. In humans this protein is encoded by the SORD gene.^[1]

Sorbitol dehydrogenase is an enzyme in carbohydrate metabolism converting sorbitol, the sugar alcohol form of glucose, into fructose.^[2] Together with aldose reductase, it provides a way for the body to produce fructose from glucose without using ATP. Sorbitol dehydrogenase uses NAD⁺ as a cofactor; its reaction is sorbitol + NAD⁺ --> fructose + NADH + H⁺. A zinc ion is also involved in catalysis. Organs that use it most frequently include the liver and seminal vesicle; it is found in all kinds of organisms from bacteria to humans. A secondary use is the metabolism of dietary sorbitol, though sorbitol is known not to absorb as well in the intestine as its related compounds glucose and fructose, and is usually found in quite small amounts in the diet anyway (except when used as an artificial sweetener).

Structure

The structure of human sorbitol dehydrogenase was determined through crystallization experiments and X-ray diffraction (with a resolution of 2.20 Å). The method used for crystallization was “Vapor Diffusion, Hanging Drop” at pH 6.2 and at a temperature of 295.0 K. Sorbitol dehydrogenase consists of four identical chains (A, B, C, D), each of which is 31% helical (14 helices) and 26% beta sheet (23 strands).^[3] MolProbity Ramachandran analysis was conducted by Lovell, Davis, et al. The results were that 97.1% of all residues were in favored regions and 100.0% of all residues were in allowed regions, with no outliers.^[4] All four chains have 356 residues each and a catalytic site. The catalytic sites contain both a serine and a histidine residue, which are hydrophilic sidechains. The residues require NAD+ and a zinc ion to be present for catalytic activity. Sorbitol dehydrogenase belongs to the oxidoreductase family, which means it helps catalyze oxidation reduction reactions. As stated above, the enzyme helps in the pathway of converting glucose into fructose.^[3]

Subunit interactions in SDH

The interactions between subunits forming a tetramer in SDH is determined by non covalent interaction.^[5] These non covalent interactions consists of an hydrophobic effect, hydrogen bonds and electrostatic interactions between the four identical subunits. For homotetrameric proteins such as SDH, the structure is believed to have evolved going from a monomeric to a dimeric and finally toward a tetrameric structure in evolution. The SDH proteins are evolutionary closely related to alcohol dehydrogenase which also belongs to the protein superfamily of medium chain dehydrogenase/reductase enzymes (MDRs). Mammalian ADHs are all dimeric enzymes but certain bacterial ADHs also share a tetrameric quaternary structure. SDH from silver leaf whitefly and yeast ADH1 both lacks a structural zinc site and shares a tetrameric quaternary structure, thus showing a close evolutionary relationship from a structural viewpoint between the two classes of proteins (ADH and SDH).^[5]

The general binding process in SDH is described by the gain in free energy which can be determined from the rate of association and dissociation between subunits.^[5]

The following image shows the assembly of the four subunits (A,B,C and D) in SDH.

A hydrogen bonding network between subunits has been shown to be important for the stability of the tetrameric quaternary protein structure. For example a study of SDH which used diverse methods such as protein sequence alignments, structural comparisons, energy calculations, gelfiltration experiments and enzyme kinetics experiments, could reveal an important hydrogen bonding network which stabilizes the tetrameric quaternary structure in mammalian SDH.^[5]

References