The Rhizobiaceae are a family of proteobacteria, including many (but not all) species of rhizobia as well as plant parasites like Agrobacterium. Rhizobiaceae are, like all Proteobacteria, gram-negative. They are aerobic and the cells are usually rod-shaped.[2] Many species of the Rhizobiaceae are diazotrophs, they are able to fix nitrogen and are symbiotic with plant roots.
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI)[3]
and the phylogeny is based on 16S rRNA-based LTP release 106 by The All-Species Living Tree Project [4]
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Rhizobium lusitanum Valverde et al. 2006 |
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Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001[5] |
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Rhizobium rubi (Hildebrand 1940) Young et al. 2001[5] |
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Rhizobium multihospitium Han et al. 2008 |
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Rhizobium tropici Martínez-Romero et al. 1991 |
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Rhizobium miluonense Gu et al. 2008 |
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Rhizobium leguminosarum (Frank 1879) Frank 1889 (Approved Lists 1980) emend. Ramírez-Bahena et al. 2008[6] |
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Rhizobium endophyticum López-López et al. 2011 |
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Rhizobium tibeticum Hou et al. 2009 |
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Rhizobium etli Segovia et al. 1993 |
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Rhizobium pisi Ramírez-Bahena et al. 2008 |
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Rhizobium phaseoli Dangeard 1926 (Approved Lists 1980) emend. Ramírez-Bahena et al. 2008 |
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Rhizobium fabae Tian et al. 2008 |
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Rhizobium hainanense Chen et al. 1997 |
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Arthrobacter viscosus Gasdorf et al. 1965[7] |
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Rhizobium alamii Berge et al. 2009 |
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Rhizobium mesosinicum Lin et al. 2009 |
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Rhizobium sullae Squartini et al. 2002 |
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Rhizobium indigoferae Wei et al. 2002 |
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Rhizobium gallicum Amarger et al. 1997 |
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Rhizobium yanglingense Tan et al. 2001 |
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Rhizobium mongolense Van Berkum et al. 1998 |
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Rhizobium oryzae Peng et al. 2008 |
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Rhizobium loessense Wei et al. 2003 |
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Rhizobium tubonense Zhang et al. 2011 |
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Rhizobium cellulosilyticum García-Fraile et al. 2007 |
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Rhizobium soli Yoon et al. 2010 |
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Rhizobium huautlense Wang et al. 1998 |
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Rhizobium alkalisoli Lu et al. 2009 |
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Aureimonas altamirensis (Jurado et al. 2006) Rathsack et al. 2011[6][8][9] |
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Aureimonas frigidaquae (Kim et al. 2008) Rathsack et al. 2011[8][9] |
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Aureimonas ureilytica (Weon et al. 2007) Rathsack et al. 2011[8][9] |
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Aurantimonas coralicida Denner et al. 2003 emend. Rathsack et al. 2011.[6][8] |
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Fulvimarina pelagi Cho and Giovannoni 2003 emend. Rathsack et al. 2011[6][8] |
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Martelella mediterranea Rivas et al. 2005[6][8] |
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Rhizobium undicola (de Lajudie et al. 1998) Young et al. 2001[5] |
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Rhizobium vitis (Ophel and Kerr 1990) Young et al. 2001[5] |
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Rhizobium borbori Zhang et al. 2011 |
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Beijerinckia fluminensis Döbereiner and Ruschel 1958[10] |
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Rhizobium larrymoorei (Bouzar and Jones 2001) Young 2004[5] |
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Rhizobium radiobacter (Beijerinck and van Delden 1902) Young et al. 2001[5][11] |
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Rhizobium selenitireducens corrig. Hunter et al. 2008 |
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Rhizobium rosettiformans Kaur et al. 2011 |
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Rhizobium daejeonense Quan et al. 2005 |
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Rhizobium aggregatum (Hirsch and Müller 1986) Kaur et al. 2011 |
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Blastobacter capsulatus Hirsch and Müller 1986[12] |
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Rhizobium giardinii Amarger et al. 1997 |
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Ensifer mexicanus Lloret et al. 2011 |
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Ensifer terangae (De Lajudie et al. 1994) Young 2003[13] |
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Ensifer saheli (De Lajudie et al. 1994) Young 2003[13] |
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Ensifer kostiensis (Nick et al. 1999) Young 2003[13] |
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Ensifer kummerowiae (Wei et al. 2002) Young 2003[13] |
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Ensifer fredii (Scholla and Elkan 1984) Young 2003[13] |
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Sinorhizobium americanum corrig. Toledo et al. 2004 |
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Ensifer arboris (Nick et al. 1999) Young 2003[13] |
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Ensifer garamanticus Merabet et al. 2010 |
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Ensifer meliloti (Dangeard 1926) Young 2003[13] |
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Ensifer numidicus Merabet et al. 2010 |
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Ensifer adhaerens Casida 1982[6] |
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References
- ↑ 1.0 1.1 J.P. Euzéby. "Proteobacteria (scroll down for Rhizobiaceae)". List of Prokaryotic names with Standing in Nomenclature (LPSN) . Retrieved 2012-05-02.
- ↑ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. ISBN 978-0-387-24145-6.
- ↑ Sayers et al. "Rhizobiaceae". National Center for Biotechnology Information (NCBI) taxonomy database . Retrieved 2012-05-02.
- ↑ All-Species Living Tree Project."16S rRNA-based LTP release 106 (full tree)". Silva Comprehensive Ribosomal RNA Database . Retrieved 2012-05-02.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 These species were formerly classified in the genus Agrobacterium.
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 This is the type species for the genus.
- ↑ Arthrobacter viscosus is currently classified in the Micrococcaceae. See Arthrobacter.
- ↑ 8.0 8.1 8.2 8.3 8.4 8.5 Species found in the genera Aurantimonas, Aureimonas, Fulvimarina, and Martelella are all currently classified in the Aurantimonadaceaea.
- ↑ 9.0 9.1 9.2 The species in the genus Aureimonas were formerly classified in the genus Aurantimonas.
- ↑ Beijerinckia fluminensis is currently classified in the Beijerinckiaceae.
- ↑ This includes Agrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942.
- ↑ Blastobacter capsulatus is currently classified in the Bradyrhizobiaceae.
- ↑ 13.0 13.1 13.2 13.3 13.4 13.5 13.6 These species were formerly classified in the genus Sinorhizobium.
