Phosphoinositide-dependent kinase-1

From Wikipedia, the free encyclopedia
Not to be confused with Pyruvate dehydrogenase lipoamide kinase isozyme 1 (PDK1).
3-phosphoinositide dependent protein kinase-1

PDB rendering based on 1h1w.
Available structures
PDB Ortholog search: PDBe, RCSB
Identifiers
SymbolsPDPK1; PDK1; PDPK2; PRO0461
External IDsOMIM: 605213 MGI: 1338068 HomoloGene: 37643 ChEMBL: 2534 GeneCards: PDPK1 Gene
EC number2.7.11.1
RNA expression pattern
More reference expression data
Orthologs
SpeciesHumanMouse
Entrez517018607
EnsemblENSG00000140992ENSMUSG00000024122
UniProtO15530Q9Z2A0
RefSeq (mRNA)NM_001261816NM_001080773
RefSeq (protein)NP_001248745NP_001074242
Location (UCSC)Chr 16:
2.59 – 2.65 Mb		Chr 17:
24.07 – 24.15 Mb
PubMed search
This box:

In the field of biochemistry, 3-phosphoinositide dependent protein kinase-1, also known as PDPK1 is a protein which in humans is encoded by the PDPK1 gene.[1] It is implicated in the development and progression of melanomas.[2]

Function

PDPK1 is a master kinase, which is crucial for the activation of AKT/PKB and many other AGC kinases including PKC, S6K, SGK. An important role for PDPK1 is in the signalling pathways activated by several growth factors and hormones including insulin signalling.

Mice lacking PDPK1 die during early embryonic development, indicating that this enzyme is critical for transmitting the growth-promoting signals nescessary for normal mammalian development.

Mice that are deficient in PDPK1 have a ≈40% decrease in body mass, mild glucose intolerance, and are resistant to cancer brought about by hyperactivation of the PI3K pathway (PTEN+/-).[3] [4]

Etymology

PDPK1 stands for 3-phosphoinositide-dependent protein kinase 1. PDPK1 functions downstream of PI3K through PDPK1's interaction with membrane phospholipids including phosphatidylinositols, phosphatidylinositol (3,4)-bisphosphate and phosphatidylinositol (3,4,5)-trisphosphate. PI3K indirectly regulates PDPK1 by phosphorylating phosphatidylinositols which in turn generates phosphatidylinositol (3,4)-bisphosphate and phosphatidylinositol (3,4,5)-trisphosphate. However, PDPK1 is believed to be constitutively active and does not always require phosphatidylinositols for its activities.

Phosphatidylinositols are only required for the activation at the membrane of some substrates including AKT. PDPK1 however does not require membrane lipid binding for the efficient phosphorylation of most of its substrates in the cytosol (not at the cell membrane).

Structure

The structure of PDPK1 can be divided into two domains; the kinase or catalytic domain and the PH domain. The PH domain functions mainly in the interaction of PDPK1 with phosphatidylinositol (3,4)-bisphosphate and phosphatidylinositol (3,4,5)-trisphosphate which is important in localization and activation of some of membrane associated PDPK1's substrates including AKT.

The kinase domain has three ligand binding sites; the substrate binding site, the ATP binding site, and the docking site (also known as PIF pocket). Several PDPK1 substrates including S6K and Protein kinase C, require the binding at this docking site. Small molecule allosteric activators of PDPK1 were shown to selectively inhibit activation of substrates that require docking site interaction. These compounds do not bind to the active site and allow PDPK1 to activate other substrates that do not require docking site interaction. PDPK1 is constitutively active and at present, there is no known inhibitor proteins for PDPK1.

The activation of PDPK1's main effector, AKT, is believed to require a proper orientation of the kinase and PH domains of PDPK1 and AKT at the membrane.

Interactions

Phosphoinositide-dependent kinase-1 has been shown to interact with SGK,[5][6] PRKACA,[7] Sodium-hydrogen exchange regulatory cofactor 2,[5] PRKCD,[8] Protein kinase Mζ,[6][8][9][10] PKN2,[8][9] PRKCI,[9] Protein kinase N1,[9] YWHAH[11] and AKT1.[12][13]

References

  1. ↑ "Entrez Gene: PDPK1". 
  2. ↑ Scortegagna, M.; Ruller, C.; Feng, Y.; Lazova, R.; Kluger, H.; Li, J. -L.; De, S. K.; Rickert, R.; Pellecchia, M.; Bosenberg, M.; Ronai, Z. A. (2013). "Genetic inactivation or pharmacological inhibition of Pdk1 delays development and inhibits metastasis of BrafV600E::Pten–/– melanoma". Oncogene. doi:10.1038/onc.2013.383. 
  3. ↑ Mora A, Komander D, van Aalten DM, Alessi DR (April 2004). "PDK1, the master regulator of AGC kinase signal transduction". Semin. Cell Dev. Biol. 15 (2): 161–70. doi:10.1016/j.semcdb.2003.12.022. PMID 15209375. 
  4. ↑ Frödin M, Antal TL, Dümmler BA, Jensen CJ, Deak M, Gammeltoft S, Biondi RM (October 2002). "A phosphoserine/threonine-binding pocket in AGC kinases and PDK1 mediates activation by hydrophobic motif phosphorylation". EMBO J. 21 (20): 5396–407. doi:10.1093/emboj/cdf551. PMC 129083. PMID 12374740. 
  5. ↑ 5.0 5.1 Chun, Jaesun; Kwon Taegun, Lee Eunjung, Suh Pann-Ghill, Choi Eui-Ju, Sun Kang Sang (October 2002). "The Na(+)/H(+) exchanger regulatory factor 2 mediates phosphorylation of serum- and glucocorticoid-induced protein kinase 1 by 3-phosphoinositide-dependent protein kinase 1". Biochem. Biophys. Res. Commun. (United States) 298 (2): 207–15. doi:10.1016/S0006-291X(02)02428-2. ISSN 0006-291X. PMID 12387817. 
  6. ↑ 6.0 6.1 Park, J; Leong M L, Buse P, Maiyar A C, Firestone G L, Hemmings B A (June 1999). "Serum and glucocorticoid-inducible kinase (SGK) is a target of the PI 3-kinase-stimulated signaling pathway". EMBO J. (ENGLAND) 18 (11): 3024–33. doi:10.1093/emboj/18.11.3024. ISSN 0261-4189. PMC 1171384. PMID 10357815. 
  7. ↑ Biondi, R M; Cheung P C, Casamayor A, Deak M, Currie R A, Alessi D R (March 2000). "Identification of a pocket in the PDK1 kinase domain that interacts with PIF and the C–terminal residues of PKA". EMBO J. (ENGLAND) 19 (5): 979–88. doi:10.1093/emboj/19.5.979. ISSN 0261-4189. PMC 305637. PMID 10698939. 
  8. ↑ 8.0 8.1 8.2 Hodgkinson, Conrad P; Sale Graham J (January 2002). "Regulation of both PDK1 and the phosphorylation of PKC-zeta and -delta by a C-terminal PRK2 fragment". Biochemistry (United States) 41 (2): 561–9. doi:10.1021/bi010719z. ISSN 0006-2960. PMID 11781095. 
  9. ↑ 9.0 9.1 9.2 9.3 Balendran, A; Biondi R M, Cheung P C, Casamayor A, Deak M, Alessi D R (July 2000). "A 3-phosphoinositide-dependent protein kinase-1 (PDK1) docking site is required for the phosphorylation of protein kinase Czeta (PKCzeta ) and PKC-related kinase 2 by PDK1". J. Biol. Chem. (UNITED STATES) 275 (27): 20806–13. doi:10.1074/jbc.M000421200. ISSN 0021-9258. PMID 10764742. 
  10. ↑ Le Good, J A; Ziegler W H, Parekh D B, Alessi D R, Cohen P, Parker P J (September 1998). "Protein kinase C isotypes controlled by phosphoinositide 3-kinase through the protein kinase PDK1". Science (UNITED STATES) 281 (5385): 2042–5. doi:10.1126/science.281.5385.2042. ISSN 0036-8075. PMID 9748166. 
  11. ↑ Sato, Saori; Fujita Naoya, Tsuruo Takashi (October 2002). "Regulation of kinase activity of 3-phosphoinositide-dependent protein kinase-1 by binding to 14-3-3". J. Biol. Chem. (United States) 277 (42): 39360–7. doi:10.1074/jbc.M205141200. ISSN 0021-9258. PMID 12177059. 
  12. ↑ Barry, Fiona A; Gibbins Jonathan M (April 2002). "Protein kinase B is regulated in platelets by the collagen receptor glycoprotein VI". J. Biol. Chem. (United States) 277 (15): 12874–8. doi:10.1074/jbc.M200482200. ISSN 0021-9258. PMID 11825911. 
  13. ↑ Persad, S; Attwell S, Gray V, Mawji N, Deng J T, Leung D, Yan J, Sanghera J, Walsh M P, Dedhar S (July 2001). "Regulation of protein kinase B/Akt-serine 473 phosphorylation by integrin-linked kinase: critical roles for kinase activity and amino acids arginine 211 and serine 343". J. Biol. Chem. (United States) 276 (29): 27462–9. doi:10.1074/jbc.M102940200. ISSN 0021-9258. PMID 11313365. 

Further reading

External links

This article is issued from Wikipedia. The text is available under the Creative Commons Attribution/Share Alike; additional terms may apply for the media files.