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(1) Basic domains |
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Activating transcription factor (AATF, 1, 2, 3, 4, 5, 6, 7) · AP-1 ( c-Fos, FOSB, FOSL1, FOSL2, JDP2, c-Jun, JUNB, JUND) · BACH ( 1, 2) · BATF · BLZF1 · C/EBP ( α, β, γ, δ, ε, ζ) · CREB ( 1, 3, L1) · CREM · DBP · DDIT3 · GABPA · HLF · MAF ( B, F, G, K) · NFE ( 2, L1, L2, L3) · NFIL3 · NRL · NRF ( 1, 2, 3) · XBP1 |
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| (1.2) Basic helix-loop-helix (bHLH) |
ATOH1 · AhR · AHRR · ARNT · ASCL1 · BHLH ( 2, 3, 9) · BMAL ( ARNTL, ARNTL2) · CLOCK · EPAS1 · FIGLA · HAND ( 1, 2) · HES ( 5, 6) · HEY ( 1, 2, L) · HES1 · HIF ( 1A, 3A) · ID ( 1, 2, 3, 4) · LYL1 · MESP2 · MXD4 · MYCL1 · MYCN · Myogenic regulatory factors ( MyoD, Myogenin, MYF5, MYF6) · Neurogenins ( 1, 2, 3) · NeuroD ( 1, 2) · NPAS ( 1, 2, 3) · OLIG ( 1, 2) · Pho4 · Scleraxis · SIM ( 1, 2) · TAL ( 1, 2) · Twist · USF1 |
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| (1.4) NF-1 | |
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| (1.5) RF-X | |
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| (1.6) Basic helix-span-helix (bHSH) | |
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subfamily 1 ( Thyroid hormone ( α, β), CAR, FXR, LXR ( α, β), PPAR ( α, β/δ, γ), PXR, RAR ( α, β, γ), ROR ( α, β, γ), Rev-ErbA ( α, β), VDR) subfamily 2 ( COUP-TF ( I, II), Ear-2, HNF4 ( α, γ), PNR, RXR ( α, β, γ), Testicular receptor ( 2, 4), TLX) subfamily 3 ( Steroid hormone ( Androgen, Estrogen ( α, β), Glucocorticoid, Mineralocorticoid, Progesterone), Estrogen related ( α, β, γ)) subfamily 4 NUR ( NGFIB, NOR1, NURR1) · subfamily 5 ( LRH-1, SF1) · subfamily 6 ( GCNF) · subfamily 0 ( DAX1, SHP) |
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| (2.2) Other Cys4 | |
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| (2.3) Cys2His2 |
General transcription factors ( TFIIA, TFIIB, TFIID, TFIIE ( 1, 2), TFIIF ( 1, 2), TFIIH ( 1, 2, 4, 2I, 3A, 3C1, 3C2)) ATBF1 · BCL ( 6, 11A, 11B) · CTCF · E4F1 · EGR ( 1, 2, 3, 4) · ERV3 · GFI1 · GLI-Krüppel family ( 1, 2, 3, REST, S1, S2, YY1) · HIC ( 1, 2) · HIVEP ( 1, 2, 3) · IKZF ( 1, 2, 3) · ILF ( 2, 3) · KLF ( 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 17) · MTF1 · MYT1 · OSR1 · PRDM9 · SALL ( 1, 2, 3, 4) · SP ( 1, 2, 4, 7, 8) · TSHZ3 · WT1 · Zbtb7 ( 7A, 7B) · ZBTB ( 11, 16, 17, 20, 32, 33, 40) · zinc finger ( 3, 7, 9, 10, 19, 22, 24, 33B, 34, 35, 41, 43, 44, 51, 74, 143, 146, 148, 165, 202, 217, 219, 238, 239, 259, 267, 268, 281, 295, 300, 318, 330, 346, 350, 365, 366, 384, 423, 451, 452, 471, 593, 638, 644, 649, 655) |
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| (2.4) Cys6 | |
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| (2.5) Alternating composition | |
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| (2.6) WRKY | |
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ARX · CDX ( 1, 2) · CRX · CUTL1 · DBX ( 1, 2) · DLX (3, 4, 5) · EMX ( 1, 2) · EN ( 1, 2) · FHL ( 1, 2, 3) · HESX1 · HHEX · HLX · Homeobox (A1, A2, A3, A4, A5, A7, A9, A10, A11, A13, B1, B2, B3, B4, B5, B6, B7, B8, B9, B13, C4, C5, C6, C8, C9, C10, C11, C12, C13, D1, D3, D4, D8, D9, D10, D11, D12, D13) · HOPX · IRX ( 1, 2, 3, 4, 5, 6, MKX) · LMX ( 1A, 1B) · MEIS ( 1, 2) · MEOX2 · MNX1 · MSX ( 1, 2) · NANOG · NKX ( 2-1, 2-2, 2-3, 2-5, 3-1, 3-2, 6-1, 6-2) · NOBOX · PBX ( 1, 2, 3) · PHF ( 1, 3, 6, 8, 10, 16, 17, 20, 21A) · PHOX ( 2A, 2B) · PITX ( 1, 2, 3) · POU domain ( PIT-1, BRN-3: A, B, C, Octamer transcription factor: 1, 2, 3/4, 6, 7, 11) · OTX ( 1, 2) · PDX1 · SATB2 · SHOX2 · SIX ( 1, 2, 3, 4, 5) · VAX1 · ZEB ( 1, 2) |
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| (3.2) Paired box | |
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E2F ( 1, 2, 3, 4, 5) · FOX proteins ( A1, A2, A3, C1, C2, D3, D4, E1, E3, F1, G1, H1, I1, J1, J2, K1, K2, L2, M1, N1, N3, O1, O3, O4, P1, P2, P3, P4) |
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| (3.4) Heat Shock Factors | |
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| (3.5) Tryptophan clusters |
ELF ( 2, 4, 5) · EGF · ELK ( 1, 3, 4) · ERF · ETS ( 1, 2, ERG, SPIB) · ETV ( 1, 4, 5, 6) · FLI1 · Interferon regulatory factors ( 1, 2, 3, 4, 5, 6, 7, 8) · MYB · MYBL2 |
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| (3.6) TEA domain |
transcriptional enhancer factor ( 1, 2, 3, 4) |
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(4) β-Scaffold factors with minor groove contacts |
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| (4.3) p53 | |
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| (4.6) TATA binding proteins | |
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BBX · HMGB ( 1, 2, 3, 4) · HMGN ( 1, 2, 3, 4) · HNF ( 1A, 1B) · LEF1 · SOX ( 1, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 18, 21) · SRY · SSRP1 · TCF ( 3, 4) · TOX ( 1, 2, 3, 4) |
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| (4.9) Grainyhead | |
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| (4.10) Cold-shock domain | |
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| (4.11) Runt | |
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(0) Other transcription factors |
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(0.2) HMGI(Y) | |
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| (0.6) Miscellaneous |
ARID ( 1A, 1B, 2, 3A, 3B, 4A) · CAP · IFI ( 16, 35) · MLL ( 2, 3, T1) · MNDA · NFY ( A, B, C) · Rho/ Sigma |
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see also transcription factor/coregulator deficiencies B bsyn: dna (repl, cycl, reco, repr) · tscr (fact, tcrg, nucl, rnat, rept, ptts) · tltn (risu, pttl, nexn) · dnab, rnab/runp · stru (domn, 1°, 2°, 3°, 4°) |
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