Christoph Steinbeck

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Christoph Steinbeck
Born 1966 (age 47–48)[1]
Neuwied[citation needed]
Residence Germany
Nationality German
Fields Cheminformatics
Bioinformatics
Metabolism[2]
Institutions European Bioinformatics Institute
Tufts University
Max Planck Institute for Chemical Ecology
Cologne University
University of Bonn
Alma mater University of Bonn[citation needed]
Thesis LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie (1995)
Doctoral students Pablo Moreno[3][4][5]
Known for Chemistry Development Kit
Journal of Cheminformatics
JChemPaint

ChEBI
Notable awards Blue Obelisk award[6]
Website
twitter.com/csteinbeck
www.ebi.ac.uk/steinbeck
uk.linkedin.com/in/steinbeck
www.steinbeck-molecular.de

Christoph Steinbeck is a chemist born in Neuwied[citation needed] in 1966, working at the European Bioinformatics Institute.

Education

Steinbeck received his PhD from the University of Bonn[7][1] in 1995 for work on LUCY, a software program for structural elucidation from nuclear magnetic resonance (NMR) correlation experiments.[8] In 2003 he received his Habilitation.[1][9]

Research

Steinbeck's research interests[2][10][11][12] have involved the elucidation of chemical structures of metabolites. He has was one of the first chemists to develop open source tools for cheminformatics. He initiated JChemPaint[13] and was founder of the Chemistry Development Kit[14][15] and is responsible for leading the team working on Chemical Entities of Biological Interest (ChEBI).[16][17][18][19][20] Currently he heads the Cheminformatics and Metabolomics group at the European Bioinformatics Institute in the United Kingdom. Together with a few other chemists he was a founder member of the Blue Obelisk[21][22] movement in 2005.[23]

Steinbeck is editor-in-chief of the Journal of Cheminformatics, past chair of the Computers-Information-Chemistry division of the German Chemical Society, past trustee of the Chemical Structure Association Trust,[24] and a lifetime member of the World Association of Theoretically Oriented Chemists.[25]

References

  1. ↑ 1.0 1.1 1.2 VIAF: 52749814
  2. ↑ 2.0 2.1 List of publications from Google Scholar
  3. ↑ Moreno, Pablo (2012). Bioinformatic methods for species-specific metabolome inference (PhD thesis). University of Cambridge. 
  4. ↑ Foster, J. M.; Moreno, P.; Fabregat, A.; Hermjakob, H.; Steinbeck, C.; Apweiler, R.; Wakelam, M. J. O.; Vizcaíno, J. A. (2013). "LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics". In Oresic, Matej. PLoS ONE 8 (5): e61951. doi:10.1371/journal.pone.0061951. PMC 3646891. PMID 23667450. 
  5. ↑ Jayaseelan, K. V.; Moreno, P.; Truszkowski, A.; Ertl, P.; Steinbeck, C. (2012). "Natural product-likeness score revisited: An open-source, open-data implementation". BMC Bioinformatics 13: 106. doi:10.1186/1471-2105-13-106. PMC 3436723. PMID 22607271. 
  6. ↑ Murray-Rust, P. Blue Obelisk Award – Christoph Steinbeck of CDK. http://blogs.ch.cam.ac.uk/pmr/2006/09/14/blue-obelisk-award-christoph-steinbeck-of-cdk/
  7. ↑ Steinbeck, Christoph (1995). LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie (PhD thesis). University of Bonn. 
  8. ↑ Steinbeck, C. (1996). "LUCY—A Program for Structure Elucidation from NMR Correlation Experiments". Angewandte Chemie International Edition in English 35 (17): 1984–1986. doi:10.1002/anie.199619841. 
  9. ↑ Steinbeck, Christoph (2003). Zur automatischen Strukturaufklärung organischer Verbindungen (Habiliation thesis). University of Bonn. 
  10. ↑ List of publications from Microsoft Academic Search
  11. ↑ List of publications from the DBLP Bibliography Server
  12. ↑ Christoph Steinbeck from the Scopus bibliographic database
  13. ↑ Krause, S.; Willighagen, E.; Steinbeck, C. (2000). "JChemPaint - Using the Collaborative Forces of the Internet to Develop a Free Editor for 2D Chemical Structures". Molecules 5: 93. doi:10.3390/50100093. 
  14. ↑ Steinbeck, C.; Han, Y.; Kuhn, S.; Horlacher, O.; Luttmann, E.; Willighagen, E. (2003). "The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics". Journal of Chemical Information and Modeling 43 (2): 493–500. doi:10.1021/ci025584y. PMID 12653513. 
  15. ↑ Steinbeck, C.; Hoppe, C.; Kuhn, S.; Floris, M.; Guha, R.; Willighagen, E. (2006). "Recent Developments of the Chemistry Development Kit (CDK) - an Open-Source Java Library for Chemo- and Bioinformatics". Current Pharmaceutical Design 12 (17): 2111–2120. doi:10.2174/138161206777585274. PMID 16796559. 
  16. ↑ Hastings, J.; De Matos, P.; Dekker, A.; Ennis, M.; Harsha, B.; Kale, N.; Muthukrishnan, V.; Owen, G.; Turner, S.; Williams, M.; Steinbeck, C. (2012). "The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013". Nucleic Acids Research 41 (Database issue): D456–D463. doi:10.1093/nar/gks1146. PMC 3531142. PMID 23180789. 
  17. ↑ Matos, P.; Adams, N.; Hastings, J.; Moreno, P.; Steinbeck, C. (2012). A Database for Chemical Proteomics: ChEBI. "Chemical Proteomics". Methods in molecular biology (Clifton, N.J.). Methods in Molecular Biology 803: 273–296. doi:10.1007/978-1-61779-364-6_19. ISBN 978-1-61779-363-9. PMID 22065232. 
  18. ↑ Vita, R.; Peters, B.; Josephs, Z.; De Matos, P.; Ennis, M.; Turner, S.; Steinbeck, C.; Seymour, E.; Zarebski, L.; Sette, A. (2011). "A Model for Collaborative Curation, the IEDB and ChEBI Curation of Non-peptidic Epitopes". Immunome research 7 (1): 1–8. PMID 21897450. 
  19. ↑ Degtyarenko, K.; Hastings, J.; De Matos, P.; Ennis, M. (2009). ChEBI: An Open Bioinformatics and Cheminformatics Resource. "Current Protocols in Bioinformatics". Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... \et al.] 14: Unit Un14.9. doi:10.1002/0471250953.bi1409s26. ISBN 0471250953. PMID 19496059. 
  20. ↑ Degtyarenko, K.; De Matos, P.; Ennis, M.; Hastings, J.; Zbinden, M.; McNaught, A.; Alcantara, R.; Darsow, M.; Guedj, M.; Ashburner, M. (2007). "ChEBI: A database and ontology for chemical entities of biological interest". Nucleic Acids Research 36 (Database issue): D344–D350. doi:10.1093/nar/gkm791. PMC 2238832. PMID 17932057. 
  21. ↑ O'Boyle, N. M.; Guha, R.; Willighagen, E. L.; Adams, S. E.; Alvarsson, J.; Bradley, J. C.; Filippov, I. V.; Hanson, R. M.; Hanwell, M. D.; Hutchison, G. R.; James, C. A.; Jeliazkova, N.; Lang, A. S. D.; Langner, K. M.; Lonie, D. C.; Lowe, D. M.; Pansanel, J. R. M.; Pavlov, D.; Spjuth, O.; Steinbeck, C.; Tenderholt, A. L.; Theisen, K. J.; Murray-Rust, P. (2011). "Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on". Journal of Cheminformatics 3 (1): 37. doi:10.1186/1758-2946-3-37. PMC 3205042. PMID 21999342. 
  22. ↑ Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. (2006). "The Blue Obelisk - Interoperability in Chemical Informatics". Journal of Chemical Information and Modeling 46 (3): 991–998. doi:10.1021/ci050400b. PMID 16711717. 
  23. ↑ Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. (2006). "The Blue Obelisk - Interoperability in Chemical Informatics". Journal of Chemical Information and Modeling 46 (3): 991–998. doi:10.1021/ci050400b. PMID 16711717. 
  24. ↑ Chemical Structure Association Newsletter, 2006, 12, http://www.csa-trust.org/news06/Issue12.pdf
  25. ↑ http://www.watoc.net/watoc.members.html
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