BioRuby
From Wikipedia, the free encyclopedia
| Stable release | 1.4.3.0001 / 25 May 2013 |
|---|---|
| Development status | Active |
| Written in | Ruby |
| Type | Bioinformatics |
| License | GPL |
| Website | bioruby.open-bio.org |
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, tools for structural biology, and other Bioinformatics.[1] BioRuby is released under the GNU GPL version 2 or the Ruby license.[2] BioRuby is one of a number of Bio* projects designed to reduce code duplication.[3] In 2011 the BioRuby project introduced the biogem software plugin system.[4] Biogems are listed on biogems.info, with 2-3 new plugins being added every month.
See also
References
- ↑ Goto N, Prins P, Nakao M, Bonnal R, Aerts J, Katayama T (October 2010). "BioRuby: bioinformatics software for the Ruby programming language". Bioinformatics 26 (20): 2617–9. doi:10.1093/bioinformatics/btq475. PMC 2951089. PMID 20739307.
- ↑ http://rubyforge.org/projects/bioruby/
- ↑ Mangalam H (2002). "The Bio* toolkits--a brief overview.". Brief Bioinform 3 (3): 296–302. PMID 12230038.
- ↑ Bonnal R, Aerts J, Githinji G, Goto N, MacLean D, Miller C, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom T, Woodcroft B, Katayama T, and Prins P (April 2012). "Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics". Bioinformatics 28 (7): 1035–7. doi:10.1093/bioinformatics/bts080. PMC 3315718. PMID 22332238.
External links
This article is issued from Wikipedia. The text is available under the Creative Commons Attribution/Share Alike; additional terms may apply for the media files.