Thermotogae

Thermotogae
Scientific classification
Domain: Bacteria
Phylum: Thermotogae
Class: Thermotogae Reysenbach 2002
Order: Thermotogales Reysenbach 2002
Genera
  •  ?Caldotoga ♥ Xue et al. 1999
  • Family Thermotogaceae Reysenbach 2002
    • Fervidobacterium Patel et al. 1985
    • Geotoga Davey et al. 1993
    • Kosmotoga DiPippo et al. 2009 emend. Nunoura et al. 2010
    • Marinitoga Wery et al. 2001
    • Oceanotoga Jayasinghearachchi and Lal 2011
    • Petrotoga Davey et al. 1993
    • Thermococcoides Feng et al. 2010
    • Thermopallium ♠ Duckworth et al. 1996
    • Thermosipho Huber et al. 1989 emend. Ravot et al. 1996
    • Thermotoga Stetter and Huber 1986
Synonyms

Togobacteria

Thermotogae is a phylum of the domain "Bacteria". This phylum comprises merely the class "Thermotogae", with the order "Thermotogales" and the family "Thermotogaceae".

It has been suggested that may be deeply branched within the bacteria, and may have much in common with species in Archaea.[1] Members of the phylum contain numerous genes similar in sequence to those of Synergistetes, Firmicutes, Actinobacteria, Deferribacteres, Chloroflexi, Deinococcus-Thermus, and Fusobacteria.[2]

Along with Aquificae, members of Thermotogae are thermophilic eubacteria.[3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [4] and National Center for Biotechnology Information (NCBI)[5] and the phylogeny is based on 16S rRNA-based LTP release 106 by The All-Species Living Tree Project [6]

?Caldotoga fontana ♥ Xue et al. 1999


?Thermopallium natronophilum ♠ Duckworth et al. 1996

  Thermaceae
  Thermotoga

?T. katamachii ♥ Takahata et al. 2000


?T. kuroii ♥ Takahata et al. 2000



T. naphthophila Takahata et al. 2001



T. petrophila Takahata et al. 2001



T. maritima Stetter and Huber 1986


T. neapolitana Jannasch et al. 1989







T. hypogea Fardeau et al. 1997


T. thermarum Windberger et al. 1992




T. subterranea Jeanthon et al. 2000



T. elfii Ravot et al. 1995


T. lettingae Balk et al. 2002







  Fervidobacterium

F. pennivorans Friedrich and Antranikian 1999


F. riparium Podosokorskaya et al. 2011



F. changbaicum Cai et al. 2007


F. islandicum Huber et al. 1991




F. gondwanense Andrews and Patel


F. nodosum Patel et al. 1985



  Thermosipho

?T. ferriphilus ♠ Kendall et al. 2002


?T. globiformans Kuwabara et al. 2011


T. melanesiensis Antoine et al. 1997



T. affectus Podosokorskaya et al. 2011




T. atlanticus Urios et al. 2004


T. geolei L'Haridon et al. 2001




T. africanus Huber et al. 1989 emend. Ravot et al. 1996


T. japonicus Takai and Horikoshi 2000









Kosmotoga arenicollaria Nunoura et al. 2011



Kosmotoga olearia DiPippo et al. 2009


Thermococcoides shengliensis Feng et al. 2010




  Marinitoga

M. hydrogenitolerans Postec et al. 2005




M. okinawensis Nunoura et al. 2007


M. piezophila Alain et al. 2002




M. camini Wery et al. 2001


M. litoralis Postec et al. 2010







Oceanotoga teriensis Jayasinghearachchi and Lal 2011

  Geotoga

?G. aestuarianus ♠ Holton et al. 2002


G. petraea Davey et al. 1993


G. subterranea Davey et al. 1993



  Petrotoga

?P. miotherma Davey et al. 1993


P. sibirica L'Haridon et al. 2002



P. olearia L'Haridon et al. 2002



P. mexicana Miranda-Tello et al. 2004



P. halophila Miranda-Tello et al. 2007


P. mobilis Lien et al. 1998











Notes:
♠ Strain found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature (LPSN)
♥ No strains lodged at National Center for Biotechnology Information NCBI and or listed in the List of Prokaryotic names with Standing in Nomenclature (LPSN)

References

  1. ^ Joel Cracraft; Michael J. Donoghue (2004). Assembling the tree of life. Oxford University Press US. pp. 46–. ISBN 9780195172348. http://books.google.com/books?id=6lXTP0YU6_kC&pg=PA46. Retrieved 5 November 2010. 
  2. ^ Kunisawa T (August 2010). "Inference of the phylogenetic position of the phylum Deferribacteres from gene order comparison". Antonie Van Leeuwenhoek 99 (2): 417–422. doi:10.1007/s10482-010-9492-7. PMID 20706870. 
  3. ^ Horiike T, Miyata D, Hamada K, et al. (January 2009). "Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs". Gene 429 (1–2): 59–64. doi:10.1016/j.gene.2008.10.006. PMC 2648810. PMID 19000750. http://linkinghub.elsevier.com/retrieve/pii/S0378-1119(08)00524-6. 
  4. ^ J.P. Euzéby. "Thermotogae". List of Prokaryotic names with Standing in Nomenclature (LPSN) [1]. http://www.bacterio.cict.fr/classifphyla.html#Thermotogae. Retrieved 2011-11-17. 
  5. ^ Sayers et al.. "Thermotogae". National Center for Biotechnology Information (NCBI) taxonomy database [2]. http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=200918&lvl=6&lin. Retrieved 2011-06-05. 
  6. ^ All-Species Living Tree Project."16S rRNA-based LTP release 106 (full tree)". Silva Comprehensive Ribosomal RNA Database [3]. http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_106/LTPs106_SSU_tree.pdf. Retrieved 2011-11-17. 
Prokaryotes: Bacteria classification (phyla and orders)
Domain: Archaea – Bacteria – Eukaryota
G-/
OM
Caulobacterales · Kiloniellales · Kordiimonadales · Parvularculales · Rhizobiales · Rhodobacterales · Rhodospirillales · Rickettsiales · Sneathiellales · Sphingomonadales
Campylobacterales · Nautiliales
Other GN
G+/
no OM
Selenomonadales
Erysipelotrichia
Erysipelotrichiales
Actinomycetales · Bifidobacteriales · Acidimicrobiales · Coriobacteriales · Nitriliruptorales · Rubrobacterales · Thermoleophilales · Solirubrobacterales

M: BAC

bact (clas)

gr+f/gr+a(t)/gr-p(c)/gr-o

drug(J1p, w, n, m, vacc)