Syndecan 1

Syndecan 1
Identifiers
Symbols SDC1; CD138; SDC; SYND1; syndecan
External IDs OMIM186355 MGI1349162 HomoloGene2252 GeneCards: SDC1 Gene
RNA expression pattern
More reference expression data
Orthologs
Species Human Mouse
Entrez 6382 20969
Ensembl ENSG00000115884 ENSMUSG00000020592
UniProt P18827 Q3THY2
RefSeq (mRNA) NM_001006946.1 NM_011519.2
RefSeq (protein) NP_001006947.1 NP_035649.1
Location (UCSC) Chr 2:
20.4 – 20.43 Mb
Chr 12:
8.78 – 8.8 Mb
PubMed search [1] [2]

Syndecan 1 is a protein which in humans is encoded by the SDC1 gene.[1][2]

Contents

Function

The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are required for internalization of the HIV-1 tat protein. The syndecan-1 protein functions as an integral membrane protein and participates in cell proliferation, cell migration and cell-matrix interactions via its receptor for extracellular matrix proteins. Altered syndecan-1 expression has been detected in several different tumor types. While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode the same protein.[3]

Application

It is a useful marker for plasma cells,[4] but only if the cells tested are already known to be derived from blood.[5]

References

  1. ^ Mali M, Jaakkola P, Arvilommi AM, Jalkanen M (April 1990). "Sequence of human syndecan indicates a novel gene family of integral membrane proteoglycans". J. Biol. Chem. 265 (12): 6884–9. ISSN  . PMID 2324102. http://www.jbc.org/cgi/pmidlookup?view=long&pmid=2324102. 
  2. ^ Ala-Kapee M, Nevanlinna H, Mali M, Jalkanen M, Schröder J (September 1990). "Localization of gene for human syndecan, an integral membrane proteoglycan and a matrix receptor, to chromosome 2". Somat. Cell Mol. Genet. 16 (5): 501–5. doi:10.1007/BF01233200. PMID 2173154. 
  3. ^ "Entrez Gene: SDC1 syndecan 1". http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6382. 
  4. ^ Rawstron AC (May 2006). "Immunophenotyping of plasma cells". Curr Protoc Cytom Chapter 6: Unit6.23. doi:10.1002/0471142956.cy0623s36. ISBN 0471142956. PMID 18770841. 
  5. ^ O'Connell FP, Pinkus JL, Pinkus GS (February 2004). "CD138 (syndecan-1), a plasma cell marker immunohistochemical profile in hematopoietic and nonhematopoietic neoplasms". Am. J. Clin. Pathol. 121 (2): 254–63. doi:10.1309/617D-WB5G-NFWX-HW4L. PMID 14983940. http://ajcp.metapress.com/openurl.asp?genre=article&issn=0002-9173&volume=121&issue=2&spage=254. 

Further reading

External links