SMARCA4

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

PDB rendering based on 2grc.
Identifiers
Symbols SMARCA4; BAF190; BRG1; FLJ39786; RTPS2; SNF2; SNF2-BETA; SNF2L4; SNF2LB; SWI2; hSNF2b
External IDs OMIM603254 MGI88192 HomoloGene55712 GeneCards: SMARCA4 Gene
EC number 3.6.1.-
RNA expression pattern
More reference expression data
Orthologs
Species Human Mouse
Entrez 6597 20586
Ensembl ENSG00000127616 ENSMUSG00000032187
UniProt P51532 Q3TKT4
RefSeq (mRNA) NM_001128844.1 NM_011417
RefSeq (protein) NP_001122316.1 NP_035547
Location (UCSC) Chr 19:
11.07 – 11.17 Mb
Chr 9:
21.42 – 21.51 Mb
PubMed search [1] [2]

Transcription activator BRG1 also known as ATP-dependent helicase SMARCA4 is a protein that in humans is encoded by the SMARCA4 gene.[1]

Contents

Function

The protein encoded by this gene is a member of the SWI/SNF family of proteins and is similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. In addition, this protein can bind BRCA1, as well as regulate the expression of the tumorigenic protein CD44.[2]

Clinical signficance

A high percent of inactivation of this gene has been found in human lung cancer cell lines.[3]

Interactions

SMARCA4 has been shown to interact with Beta-catenin,[4] SIN3A,[5][6] Myc,[7][8] CBX5,[9] SMARCE1,[10][11] HSP90B1,[12] STAT2,[13] CREB-binding protein,[14][15] Glucocorticoid receptor,[16][17] FANCA,[12][18] STK11,[19] BRCA1,[20][21] ACTL6A,[10][11] POLR2A,[5][10][11] ING1,[6] Cyclin E1,[22][23] P53,[24] Estrogen receptor alpha,[25][14] Prohibitin,[26] SMARCC2,[10][12][11] SMARCC1,[5][10][12][11] SMARCB1,[5][27][10][12][11] ARID1B[28][29] and ARID1A.[10][11]

References

  1. ^ Chiba H, Muramatsu M, Nomoto A, Kato H (Jul 1994). "Two human homologues of Saccharomyces cerevisiae SWI2/SNF2 and Drosophila brahma are transcriptional coactivators cooperating with the estrogen receptor and the retinoic acid receptor". Nucleic Acids Res 22 (10): 1815–20. doi:10.1093/nar/22.10.1815. PMC 308079. PMID 8208605. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=308079. 
  2. ^ "Entrez Gene: SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4". http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6597. 
  3. ^ Medina PP, Romero OA, Kohno T, Montuenga LM, Pio R, Yokota J, Sanchez-Cespedes M (May 2008). "Frequent BRG1/SMARCA4-inactivating mutations in human lung cancer cell lines". Hum. Mutat. 29 (5): 617–22. doi:10.1002/humu.20730. PMID 18386774. 
  4. ^ Barker, N; Hurlstone A, Musisi H, Miles A, Bienz M, Clevers H (Sep. 2001). "The chromatin remodelling factor Brg-1 interacts with beta-catenin to promote target gene activation". EMBO J. (England) 20 (17): 4935–43. doi:10.1093/emboj/20.17.4935. ISSN 0261-4189. PMC 125268. PMID 11532957. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=125268. 
  5. ^ a b c d Sif, S; Saurin A J, Imbalzano A N, Kingston R E (Mar. 2001). "Purification and characterization of mSin3A-containing Brg1 and hBrm chromatin remodeling complexes". Genes Dev. (United States) 15 (5): 603–18. doi:10.1101/gad.872801. ISSN 0890-9369. PMC 312641. PMID 11238380. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=312641. 
  6. ^ a b Kuzmichev, A; Zhang Y, Erdjument-Bromage H, Tempst P, Reinberg D (Feb. 2002). "Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1)". Mol. Cell. Biol. (United States) 22 (3): 835–48. doi:10.1128/MCB.22.3.835-848.2002. ISSN 0270-7306. PMC 133546. PMID 11784859. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=133546. 
  7. ^ Ewing, Rob M; Chu Peter, Elisma Fred, Li Hongyan, Taylor Paul, Climie Shane, McBroom-Cerajewski Linda, Robinson Mark D, O'Connor Liam, Li Michael, Taylor Rod, Dharsee Moyez, Ho Yuen, Heilbut Adrian, Moore Lynda, Zhang Shudong, Ornatsky Olga, Bukhman Yury V, Ethier Martin, Sheng Yinglun, Vasilescu Julian, Abu-Farha Mohamed, Lambert Jean-Philippe, Duewel Henry S, Stewart Ian I, Kuehl Bonnie, Hogue Kelly, Colwill Karen, Gladwish Katharine, Muskat Brenda, Kinach Robert, Adams Sally-Lin, Moran Michael F, Morin Gregg B, Topaloglou Thodoros, Figeys Daniel (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Mol. Syst. Biol. (England) 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1847948. 
  8. ^ Park, Jeonghyeon; Wood Marcelo A, Cole Michael D (Mar. 2002). "BAF53 forms distinct nuclear complexes and functions as a critical c-Myc-interacting nuclear cofactor for oncogenic transformation". Mol. Cell. Biol. (United States) 22 (5): 1307–16. doi:10.1128/MCB.22.5.1307-1316.2002. ISSN 0270-7306. PMC 134713. PMID 11839798. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=134713. 
  9. ^ Nielsen, Anders Lade; Sanchez Cecilia, Ichinose Hiroshi, Cerviño Margarita, Lerouge Thierry, Chambon Pierre, Losson Régine (Nov. 2002). "Selective interaction between the chromatin-remodeling factor BRG1 and the heterochromatin-associated protein HP1alpha". EMBO J. (England) 21 (21): 5797–806. doi:10.1093/emboj/cdf560. ISSN 0261-4189. PMC 131057. PMID 12411497. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=131057. 
  10. ^ a b c d e f g Wang, W; Côté J, Xue Y, Zhou S, Khavari P A, Biggar S R, Muchardt C, Kalpana G V, Goff S P, Yaniv M, Workman J L, Crabtree G R (Oct. 1996). "Purification and biochemical heterogeneity of the mammalian SWI-SNF complex". EMBO J. (ENGLAND) 15 (19): 5370–82. ISSN 0261-4189. PMC 452280. PMID 8895581. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=452280. 
  11. ^ a b c d e f g Zhao, K; Wang W, Rando O J, Xue Y, Swiderek K, Kuo A, Crabtree G R (Nov. 1998). "Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling". Cell (UNITED STATES) 95 (5): 625–36. doi:10.1016/S0092-8674(00)81633-5. ISSN 0092-8674. PMID 9845365. 
  12. ^ a b c d e Otsuki, T; Furukawa Y, Ikeda K, Endo H, Yamashita T, Shinohara A, Iwamatsu A, Ozawa K, Liu J M (Nov. 2001). "Fanconi anemia protein, FANCA, associates with BRG1, a component of the human SWI/SNF complex". Hum. Mol. Genet. (England) 10 (23): 2651–60. doi:10.1093/hmg/10.23.2651. ISSN 0964-6906. PMID 11726552. 
  13. ^ Huang, Mei; Qian Feng, Hu Yuanyu, Ang Chengeng, Li Zhong, Wen Zilong (Oct. 2002). "Chromatin-remodelling factor BRG1 selectively activates a subset of interferon-alpha-inducible genes". Nat. Cell Biol. (England) 4 (10): 774–81. doi:10.1038/ncb855. ISSN 1465-7392. PMID 12244326. 
  14. ^ a b DiRenzo, J; Shang Y, Phelan M, Sif S, Myers M, Kingston R, Brown M (Oct. 2000). "BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation". Mol. Cell. Biol. (UNITED STATES) 20 (20): 7541–9. doi:10.1128/MCB.20.20.7541-7549.2000. ISSN 0270-7306. PMC 86306. PMID 11003650. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=86306. 
  15. ^ Neish, A S; Anderson S F, Schlegel B P, Wei W, Parvin J D (Feb. 1998). "Factors associated with the mammalian RNA polymerase II holoenzyme". Nucleic Acids Res. (ENGLAND) 26 (3): 847–53. doi:10.1093/nar/26.3.847. ISSN 0305-1048. PMC 147327. PMID 9443979. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=147327. 
  16. ^ Hsiao, Pei-Wen; Fryer Christy J, Trotter Kevin W, Wang Weidong, Archer Trevor K (Sep. 2003). "BAF60a mediates critical interactions between nuclear receptors and the BRG1 chromatin-remodeling complex for transactivation". Mol. Cell. Biol. (United States) 23 (17): 6210–20. doi:10.1128/MCB.23.17.6210-6220.2003. ISSN 0270-7306. PMC 180928. PMID 12917342. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=180928. 
  17. ^ Wallberg, A E; Neely K E, Hassan A H, Gustafsson J A, Workman J L, Wright A P (Mar. 2000). "Recruitment of the SWI-SNF chromatin remodeling complex as a mechanism of gene activation by the glucocorticoid receptor tau1 activation domain". Mol. Cell. Biol. (UNITED STATES) 20 (6): 2004–13. doi:10.1128/MCB.20.6.2004-2013.2000. ISSN 0270-7306. PMC 110817. PMID 10688647. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=110817. 
  18. ^ Reuter, Tanja Y; Medhurst Annette L, Waisfisz Quinten, Zhi Yu, Herterich Sabine, Hoehn Holger, Gross Hans J, Joenje Hans, Hoatlin Maureen E, Mathew Christopher G, Huber Pia A J (Oct. 2003). "Yeast two-hybrid screens imply involvement of Fanconi anemia proteins in transcription regulation, cell signaling, oxidative metabolism, and cellular transport". Exp. Cell Res. (United States) 289 (2): 211–21. doi:10.1016/S0014-4827(03)00261-1. ISSN 0014-4827. PMID 14499622. 
  19. ^ Marignani, P A; Kanai F, Carpenter C L (Aug. 2001). "LKB1 associates with Brg1 and is necessary for Brg1-induced growth arrest". J. Biol. Chem. (United States) 276 (35): 32415–8. doi:10.1074/jbc.C100207200. ISSN 0021-9258. PMID 11445556. 
  20. ^ Hill, David A; de la Serna Ivana L, Veal Timothy M, Imbalzano Anthony N (Apr. 2004). "BRCA1 interacts with dominant negative SWI/SNF enzymes without affecting homologous recombination or radiation-induced gene activation of p21 or Mdm2". J. Cell. Biochem. (United States) 91 (5): 987–98. doi:10.1002/jcb.20003. ISSN 0730-2312. PMID 15034933. 
  21. ^ Bochar, D A; Wang L, Beniya H, Kinev A, Xue Y, Lane W S, Wang W, Kashanchi F, Shiekhattar R (Jul. 2000). "BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer". Cell (UNITED STATES) 102 (2): 257–65. doi:10.1016/S0092-8674(00)00030-1. ISSN 0092-8674. PMID 10943845. 
  22. ^ Wong, A K; Shanahan F, Chen Y, Lian L, Ha P, Hendricks K, Ghaffari S, Iliev D, Penn B, Woodland A M, Smith R, Salada G, Carillo A, Laity K, Gupte J, Swedlund B, Tavtigian S V, Teng D H, Lees E (Nov. 2000). "BRG1, a component of the SWI-SNF complex, is mutated in multiple human tumor cell lines". Cancer Res. (UNITED STATES) 60 (21): 6171–7. ISSN 0008-5472. PMID 11085541. 
  23. ^ Shanahan, F; Seghezzi W, Parry D, Mahony D, Lees E (Feb. 1999). "Cyclin E associates with BAF155 and BRG1, components of the mammalian SWI-SNF complex, and alters the ability of BRG1 to induce growth arrest". Mol. Cell. Biol. (UNITED STATES) 19 (2): 1460–9. ISSN 0270-7306. PMC 116074. PMID 9891079. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=116074. 
  24. ^ Lee, Daeyoup; Kim Jin Woo, Seo Taegun, Hwang Sun Gwan, Choi Eui-Ju, Choe Joonho (Jun. 2002). "SWI/SNF complex interacts with tumor suppressor p53 and is necessary for the activation of p53-mediated transcription". J. Biol. Chem. (United States) 277 (25): 22330–7. doi:10.1074/jbc.M111987200. ISSN 0021-9258. PMID 11950834. 
  25. ^ Ichinose, H; Garnier J M, Chambon P, Losson R (Mar. 1997). "Ligand-dependent interaction between the estrogen receptor and the human homologues of SWI2/SNF2". Gene (NETHERLANDS) 188 (1): 95–100. doi:10.1016/S0378-1119(96)00785-8. ISSN 0378-1119. PMID 9099865. 
  26. ^ Wang, Sheng; Zhang Baohua, Faller Douglas V (Jun. 2002). "Prohibitin requires Brg-1 and Brm for the repression of E2F and cell growth". EMBO J. (England) 21 (12): 3019–28. doi:10.1093/emboj/cdf302. ISSN 0261-4189. PMC 126057. PMID 12065415. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=126057. 
  27. ^ Sullivan, E K; Weirich C S, Guyon J R, Sif S, Kingston R E (Sep. 2001). "Transcriptional activation domains of human heat shock factor 1 recruit human SWI/SNF". Mol. Cell. Biol. (United States) 21 (17): 5826–37. doi:10.1128/MCB.21.17.5826-5837.2001. ISSN 0270-7306. PMC 87302. PMID 11486022. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=87302. 
  28. ^ Hurlstone, Adam F L; Olave Ivan A, Barker Nick, van Noort Mascha, Clevers Hans (May. 2002). "Cloning and characterization of hELD/OSA1, a novel BRG1 interacting protein". Biochem. J. (England) 364 (Pt 1): 255–64. ISSN 0264-6021. PMC 1222568. PMID 11988099. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1222568. 
  29. ^ Inoue, Hiroko; Furukawa Takako, Giannakopoulos Stavros, Zhou Sharleen, King David S, Tanese Naoko (Nov. 2002). "Largest subunits of the human SWI/SNF chromatin-remodeling complex promote transcriptional activation by steroid hormone receptors". J. Biol. Chem. (United States) 277 (44): 41674–85. doi:10.1074/jbc.M205961200. ISSN 0021-9258. PMID 12200431. 

Further reading

  • Medina PP, Sanchez-Cespedes M, Cespedes MS (2008). "Involvement of the chromatin-remodeling factor BRG1/SMARCA4 in human cancer". Epigenetics 3 (2): 64–8. doi:10.4161/epi.3.2.6153. PMID 18437052. 
  • Voellmy R (1996). "Sensing stress and responding to stress.". EXS 77: 121–37. PMID 8856972. 
  • Peterson CL (2002). "Chromatin remodeling: nucleosomes bulging at the seams.". Curr. Biol. 12 (7): R245–7. doi:10.1016/S0960-9822(02)00782-0. PMID 11937040. 

External links