This list of sequenced eubacterial genomes contains all the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched [1] on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases.
Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.
For the genomes of archaea see list of sequenced archaeal genomes.
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Acidobacteria bacterium | Ellin345 | Acidobacteria | 5,650,368 | 4,777 | Unpublished[1] |
Acinetobacter sp. | ADP1 | Proteobacteria Gammaproteobacteria | 3,598,621 | 3,325 | [2] |
Agrobacterium tumefaciens | C58 | Proteobacteria Alphaproteobacteria | 2,841,581 | 2,722 | [3] |
Anabaena nostoc | PCC7120 | Cyanobacteria Nostocales | 6,413,771 | 5,368 | [4] |
Anabaena variabilis | ATCC29413 | Cyanobacteria Nostocales | 6,365,727 | 5,039 | Unpublished[1] |
Anaeromyxobacter dehalogenans | 2CP-C | Proteobacteria delta-epsilon | 5,013,479 | 4,346 | Unpublished[1] |
Anaplasma marginale | StMaries | Proteobacteria Alphaproteobacteria | 1,197,687 | 949 | [5] |
Anaplasma phagocytophilum | HZ | Proteobacteria Alphaproteobacteria | 1,471,282 | 1,264 | [6] |
Aquifex aeolicus | VF5 | Aquificae Aquificae | 1,551,335 | 1,522 | [7] |
Azoarcus sp. | EbN1 | Proteobacteria Betaproteobacteria | 4,296,230 | 4,128 | [8] |
Bacillus anthracis | Ames | Firmicutes Bacilli | 5,227,293 | 5,311 | [9] |
Bacillus anthracis | Sterne | Firmicutes Bacilli | 5,228,663 | 5,287 | Unpublished[1] |
Bacillus cereus | ATCC10987 | Firmicutes Bacilli | 5,224,283 | 5,603 | [10] |
Bacillus cereus | ATCC14579 | Firmicutes Bacilli | 5,411,809 | 5,234 | [11] |
Bacillus cereus | ZK | Firmicutes Bacilli | 5,300,915 | 5,134 | Unpublished[1] |
Bacillus clausii | KSMK16 | Firmicutes Bacilli | 4,303,871 | 4,108 | [12] |
Bacillus halodurans | C125 | Firmicutes Bacilli | 4,202,352 | 4,066 | [13] |
Bacillus licheniformis | ATCC14580 | Firmicutes Bacilli | 4,222,334 | 4,152 | [14] |
Bacillus licheniformis | Unspecified | Firmicutes Bacilli | 4,222,645 | 4,196 | [15] |
Bacillus licheniformis | DSM13 | Firmicutes Bacilli | 4,222,645 | 4,196 | [15] |
Bacillus subtilis | 168 | Firmicutes Bacilli | 4,214,630 | 4,106 | [16] |
Bacillus thuringiensis | 9727 | Firmicutes Bacilli | 5,237,682 | 5,117 | Unpublished[1] |
Bacteroides fragilis | NCTC9343 | Bacteroidetes/Chlorobi Bacteroidetes | 5,205,140 | 4,260 | [17] |
Bacteroides fragilis | YCH46 | Bacteroidetes/Chlorobi Bacteroidetes | 5,277,274 | 4,578 | Unpublished[1] |
Bacteroides thetaiotaomicron | VPI5482 | Bacteroidetes/Chlorobi Bacteroidetes | 6,260,361 | 4,778 | [18] |
Bartonella henselae | Houston-1 | Proteobacteria Alphaproteobacteria | 1,931,047 | 1,612 | [19] |
Bartonella quintana | Toulouse | Proteobacteria Alphaproteobacteria | 1,581,384 | 1,308 | [19] |
Baumannia cicadellinicola | Hc | Proteobacteria Gammaproteobacteria | 686,194 | 595 | Unpublished[1] |
Bdellovibrio bacteriovorus | HD100 | Proteobacteria delta-epsilon | 3,782,950 | 3,583 | [20] |
Bifidobacterium longum | NCC2705 | Acidobacteria | 2,256,640 | 1,727 | [21] |
Blochmannia floridanus | Strain | Proteobacteria Gammaproteobacteria | 705,557 | 589 | [22] |
Blochmannia pennsylvanicus | bpEN | Proteobacteria Gammaproteobacteria | 791,654 | 610 | [23] |
Bordetella bronchiseptica | RB50 | Proteobacteria Betaproteobacteria | 5,339,179 | 5,006 | Unpublished[1] |
Bordetella parapertussis | 12822 | Proteobacteria Betaproteobacteria | 4,773,551 | 4,402 | Unpublished[1] |
Bordetella pertussis | TohamaI | Proteobacteria Betaproteobacteria | 4,086,189 | 3,806 | Unpublished[1] |
Borrelia burgdorferi | B31 | Spirochaetes | 910,724 | 850 | [24] |
Borrelia garinii | PBi | Spirochaetes | 904,246 | 832 | [25] |
Bradyrhizobium japonicum | USDA110 | Proteobacteria Alphaproteobacteria | 9,105,828 | 8,317 | [26] |
Brucella abortus | 2308 (chromosome I) | Proteobacteria Alphaproteobacteria | 1,156,948 | 1,164 | [27] |
2308 (chromosome II) | Proteobacteria Alphaproteobacteria | 2,121,359 | 2,186 | [27] | |
Brucella abortus | 9-941 (chromosome I) | Proteobacteria Alphaproteobacteria | 2,124,241 | 2,030 | [28] |
9-941 (chromosome II) | Proteobacteria Alphaproteobacteria | 1,162,204 | 1,055 | [28] | |
Brucella melitensis | 16M (chromosome I) | Proteobacteria Alphaproteobacteria | 2,117,144 | 2,059 | [29] |
16M (chromosome II) | Proteobacteria Alphaproteobacteria | 1,177,787 | 1,139 | [29] | |
Brucella suis | 1330 (chromosome I) | Proteobacteria Alphaproteobacteria | 2,107,794 | 2,123 | [30] |
1330 (chromosome II) | Proteobacteria Alphaproteobacteria | 1,207,381 | 1,150 | [30] | |
Buchnera aphidicola | APS | Proteobacteria Gammaproteobacteria | 640,681 | 564 | [31] |
Buchnera aphidicola | B | Proteobacteria Gammaproteobacteria | 615,980 | 504 | [32] |
Buchnera aphidicola | Sg | Proteobacteria Gammaproteobacteria | 641,454 | 545 | [33] |
Burkholderia cenocepacia | AU1054 | Proteobacteria Betaproteobacteria | 3,294,563 | 2,965 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,788,459 | 2,472 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,196,094 | 1,040 | Unpublished[1] |
Burkholderia mallei | ATCC23344 | Proteobacteria Betaproteobacteria | 3,510,148 | 2,996 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,325,379 | 2,029 | [34] |
Burkholderia pseudomallei | 1710b | Proteobacteria Betaproteobacteria | 4,126,292 | 3,736 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,181,762 | 2,611 | Unpublished[1] |
Burkholderia pseudomallei | K96243 (chromosome I) | Proteobacteria Betaproteobacteria | 4,074,542 | 3,460 | [35] |
K96243 (chromosome II) | Proteobacteria Betaproteobacteria | 3,173,005 | 2,395 | [35] | |
Burkholderia species | 383 | Proteobacteria Betaproteobacteria | 3,694,126 | 3,334 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,587,082 | 3,174 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,395,069 | 1,209 | Unpublished[1] |
Burkholderia thailandensis | E264 | Proteobacteria Betaproteobacteria | 3,809,201 | 3,276 | [36] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,914,771 | 2,358 | [36] |
Burkholderia xenovorans | LB400 | Proteobacteria Betaproteobacteria | 4,895,836 | 4,430 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,363,523 | 2,960 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,471,779 | 1,312 | Unpublished[1] |
Campylobacter jejuni | NCTC11168 | Proteobacteria delta-epsilon | 1,641,481 | 1,643 | [37] |
Campylobacter jejuni | RM1221 | Proteobacteria delta-epsilon | 1,777,831 | 1,838 | [38] |
Carboxydothermus hydrogenoformans | Z2901 | Firmicutes Clostridia | 2,401,520 | 2,620 | Unpublished[1] |
Carsonella ruddii | PV | Proteobacteria Gammaproteobacteria | 159,662 | 182 | [39] |
Caulobacter crescentus | CB15 | Proteobacteria Alphaproteobacteria | 4,016,947 | 3,737 | [40] |
Chlamydia muridarum | Nigg | Chlamydiae/Verrucomicrobia Chlamydiae | 1,072,950 | 904 | [41] |
Chlamydia trachomatis | AHAR13 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,044,459 | 911 | [42] |
Chlamydia trachomatis | DUW | Chlamydiae/Verrucomicrobia Chlamydiae | 1,042,519 | 894 | [43] |
Chlamydophila abortus | S26-3 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,144,377 | 961 | [44] |
Chlamydophila caviae | GPIC | Chlamydiae/Verrucomicrobia Chlamydiae | 1,173,390 | 998 | [45] |
Chlamydophila felis | FeC56 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,166,239 | 1,005 | Unpublished[1] |
Chlamydophila pneumoniae | AR39 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,229,853 | 1,110 | [41] |
Chlamydophila pneumoniae | CWL029 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,230,230 | 1,052 | [46] |
Chlamydophila pneumoniae | J138 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,226,565 | 1,069 | [47] |
Chlamydophila pneumoniae | TW183 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,225,935 | 1,113 | Unpublished[1] |
Chlorobium chlorochromatii | CaD3 | Bacteroidetes/Chlorobi Chlorobi | 2,572,079 | 2,002 | Unpublished[1] |
Chlorobium tepidum | TLS | Bacteroidetes/Chlorobi Chlorobi | 2,154,946 | 2,255 | [48] |
Chromobacterium violaceum | ATCC12472 | Proteobacteria Betaproteobacteria | 4,751,080 | 4,407 | [49] |
Chromohalobacter salexigens | DSM3043 | Proteobacteria Gammaproteobacteria | 3,696,649 | 3,298 | Unpublished[1] |
Clostridium acetobutylicum | ATCC824 | Firmicutes Clostridia | 3,940,880 | 3,672 | [50] |
Clostridium difficile | QCD-32g58 | Firmicutes Clostridia | 3,840,681 | Unpublished[1] | |
Clostridium perfringens | 13 | Firmicutes Clostridia | 3,031,430 | 2,660 | [51] |
Clostridium tetani | E88 | Firmicutes Clostridia | 2,799,251 | 2,373 | [52] |
Colwellia psychrerythraea | 34H | Proteobacteria Gammaproteobacteria | 5,373,180 | 4,910 | Unpublished[1] |
Corynebacterium diphtheriae | NCTC13129 | Acidobacteria | 2,488,635 | 2,320 | [53] |
Corynebacterium efficiens | YS314 | Acidobacteria | 3,147,090 | 2,942 | [54] |
Corynebacterium glutamicum | ATCC13032 | Acidobacteria | 3,309,401 | 3,099 | Unpublished[1] |
Unspecified | Unspecified | Acidobacteria | 3,282,708 | 3,058 | [55] |
Corynebacterium jeikeium | K411 | Acidobacteria | 2,462,499 | 2,104 | [56] |
Coxiella burnetii | RSA493 | Proteobacteria Gammaproteobacteria | 1,995,281 | 2,016 | [57] |
Cyanobacteria bacterium | YellowstoneA | Cyanobacteria Chroococcales | 2,932,766 | 2,760 | [58] |
Cyanobacteria bacterium | YellowstoneB | Cyanobacteria Chroococcales | 3,046,682 | 2,862 | [58] |
Cytophaga hutchinsonii | ATCC33406 | Bacteroidetes/Chlorobi Chlorobi | 4,433,218 | Unpublished[1] | |
Dechloromonas aromatica | RCB | Proteobacteria Betaproteobacteria | 4,501,104 | 4,171 | Unpublished[1] |
Dehalococcoides etheno | 195 | Chloroflexi Dehalococcoidetes | 1,469,720 | 1,580 | [59] |
Dehalococcoides species | CBDB1 | Chloroflexi Dehalococcoidetes | 1,395,502 | 1,458 | [60] |
Deinococcus geothermalis | DSM11300 | Deinococcus-Thermus Deinococci | 2,467,205 | 2,335 | Unpublished[1] |
Deinococcus radiodurans | R1 | Deinococcus-Thermus Deinococci | 2,648,638 | 2,579 | [61] |
Unspecified | Unspecified | Deinococcus-Thermus Deinococci | 412,348 | 357 | [61] |
Desulfitobacterium hafniense | Y51 | Firmicutes Clostridia | 5,727,534 | 5,060 | [62] |
Desulfotalea psychrophila | LSv54 | Proteobacteria delta-epsilon | 3,523,383 | 3,118 | Unpublished[1] |
Desulfovibrio desulfuricans | G20 | Proteobacteria delta-epsilon | 3,730,232 | 3,775 | Unpublished[1] |
Desulfovibrio vulgaris | Hildenborough | Proteobacteria delta-epsilon | 3,570,858 | 3,379 | [63] |
Ehrlichia canis | Jake | Proteobacteria Alphaproteobacteria | 1,315,030 | 925 | Unpublished[1] |
Ehrlichia chaffeensis | Arkansas | Proteobacteria Alphaproteobacteria | 1,176,248 | 1,105 | [6] |
Ehrlichia ruminantium | Gardel | Proteobacteria Alphaproteobacteria | 1,499,920 | 950 | Unpublished[1] |
Ehrlichia ruminantium | Welgevonden | Proteobacteria Alphaproteobacteria | 1,512,977 | 958 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Alphaproteobacteria | 1,516,355 | 920 | [64] |
Enterococcus faecalis | V583 | Firmicutes Bacilli | 3,218,031 | 3,113 | [65] |
Erwinia carotovora | SCRI1043 | Proteobacteria Gammaproteobacteria | 5,064,019 | 4,492 | Unpublished[1] |
Erythrobacter litoralis | HTCC2594 | Proteobacteria Alphaproteobacteria | 3,052,398 | 3,011 | Unpublished[1] |
Escherichia coli | 536 | Proteobacteria Gammaproteobacteria | 4,938,920 | 4,685 | Unpublished[1] |
Escherichia coli | CFT073 | Proteobacteria Gammaproteobacteria | 5,231,428 | 5,379 | [66] |
Escherichia coli | K-12 | Proteobacteria Gammaproteobacteria | 4,639,675 | 4,331 | [67] |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 4,646,332 | 4,337 | [68] |
Escherichia coli | O157:H7 | Proteobacteria Gammaproteobacteria | 5,528,445 | 5,349 | [69] |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 5,498,450 | 5,361 | [70] |
Escherichia coli | UTI89 | Proteobacteria Gammaproteobacteria | 5,065,741 | 5,066 | Unpublished[1] |
Francisella tularensis | LVS | Proteobacteria Gammaproteobacteria | 1,895,994 | 1,967 | Unpublished[1] |
Francisella tularensis | SCHUS4 | Proteobacteria Gammaproteobacteria | 1,892,819 | 1,804 | [71] |
Frankia species | CcI3 | Acidobacteria | 5,433,628 | 4,499 | Unpublished[1] |
Fusobacterium nucleatum | ATCC25586 | Fusobacteria Fusobacteria | 2,174,500 | 2,067 | [72] |
Geobacillus kaustophilus | HTA426 | Firmicutes Bacilli | 3,544,776 | 3,498 | [73] |
Geobacter metallireducens | GS15 | Proteobacteria delta-epsilon | 3,997,420 | 3,519 | Unpublished[1] |
Geobacter sulfurreducens | PCA | Proteobacteria delta-epsilon | 3,814,139 | 3,447 | [74] |
Gloeobacter violaceus | PCC7421 | Cyanobacteria Gloeobacteria | 4,659,019 | 4,430 | [75] |
Gluconobacter oxydans | 621H | Proteobacteria Alphaproteobacteria | 2,702,173 | 2,432 | [76] |
Haemophilus ducreyi | 3500HP | Proteobacteria Gammaproteobacteria | 1,698,955 | 1,717 | Unpublished[1] |
Haemophilus influenzae | 86-028NP | Proteobacteria Gammaproteobacteria | 1,913,428 | 1,792 | [77] |
Haemophilus influenzae | Rd | Proteobacteria Gammaproteobacteria | 1,830,138 | 1,709 | [78] |
Hahella chejuensis | KCTC2396 | Proteobacteria Gammaproteobacteria | 7,215,267 | 6,782 | [79] |
Helicobacter hepaticus | ATCC51449 | Proteobacteria delta-epsilon | 1,799,146 | 1,875 | [80] |
Helicobacter pylori | 26695 | Proteobacteria delta-epsilon | 1,667,867 | 1,566 | [81] |
Helicobacter pylori | HPAG1 | Proteobacteria delta-epsilon | 1,596,366 | 1,536 | Unpublished[1] |
Helicobacter pylori | J99 | Proteobacteria delta-epsilon | 1,643,831 | 1,491 | [82] |
Idiomarina loihiensis | L2TR | Proteobacteria Gammaproteobacteria | 2,839,318 | 2,628 | [83] |
Jannaschia species | CCS1 | Proteobacteria Alphaproteobacteria | 4,317,977 | 4,212 | Unpublished[1] |
Lactobacillus acidophilus | NCFM | Firmicutes Bacilli | 1,993,564 | 1,864 | [84] |
Lactobacillus delbrueckii | bulgaricus | Firmicutes Bacilli | 1,864,998 | 2,096 | Unpublished[1] |
Lactobacillus johnsonii | NCC533 | Firmicutes Bacilli | 1,992,676 | 1,821 | [85] |
Lactobacillus plantarum | WCFS1 | Firmicutes Bacilli | 3,308,274 | 3,051 | [85] |
Lactobacillus sakei | 23K | Firmicutes Bacilli | 1,884,661 | 1,885 | Unpublished[1] |
Lactobacillus sakei | sakei23K | Firmicutes Bacilli | 1,884,661 | 1,885 | Unpublished[1] |
Lactobacillus salivarius | UCC118 | Firmicutes Bacilli | 1,827,111 | 1,717 | Unpublished[1] |
Lactococcus lactis | IL1403 | Firmicutes Bacilli | 2,365,589 | 2,266 | [86] |
Lawsonia intracellularis | PHEMN1-00 | Proteobacteria delta-epsilon | 1,719,014 | 1,344 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria delta-epsilon | 39,794 | 24 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria delta-epsilon | 194,553 | 104 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria delta-epsilon | 1,457,619 | 1,187 | Unpublished[1] |
Legionella pneumophila | Lens | Proteobacteria Gammaproteobacteria | 3,345,687 | 2,947 | [87] |
Legionella pneumophila | Paris | Proteobacteria Gammaproteobacteria | 3,503,610 | 3,082 | [87] |
Legionella pneumophila | Philadelphia1 | Proteobacteria Gammaproteobacteria | 3,397,754 | 2,942 | Unpublished[1] |
Leifsonia xyli | CTCB07 | Acidobacteria | 2,584,158 | 2,030 | Unpublished[1] |
Leptospira interrogans | 56601 | Spirochaetes | 4,332,241 | 4,358 | [88] |
Unspecified | Unspecified | Spirochaetes | 358,943 | 367 | [88] |
Leptospira interrogans | FiocruzL1130 | Spirochaetes | 4,277,185 | 3,394 | [89] |
Unspecified | Unspecified | Spirochaetes | 350,181 | 264 | [89] |
Listeria innocua | Clip11262 | Firmicutes Bacilli | 3,011,208 | 2,981 | [90] |
Listeria monocyto | EGD | Firmicutes Bacilli | 2,944,528 | 2,855 | [90] |
Listeria monocyto | 4b | Firmicutes Bacilli | 2,905,187 | 2,821 | [91] |
Magnetospirillum magneticum | AMB1 | Proteobacteria Alphaproteobacteria | 4,967,148 | 4,559 | [92] |
Mannheimia succiniciproducens | MBEL55E | Proteobacteria Gammaproteobacteria | 2,314,078 | 2,384 | Unpublished[1] |
Mesoplasma florum | L1 | Firmicutes Mollicutes | 793,224 | 683 | Unpublished[1] |
Mesorhizobium loti | MAFF303099 | Proteobacteria Alphaproteobacteria | 7,036,071 | 6,752 | [93] |
Methylobacillus flagellatus | KT | Proteobacteria Betaproteobacteria | 2,971,517 | 2,753 | Unpublished[1] |
Methylococcus capsulatus | Bath | Proteobacteria Gammaproteobacteria | 3,304,561 | 2,960 | [94] |
Moorella thermoacetica | ATCC39073 | Firmicutes Clostridia | 2,628,784 | 2,465 | Unpublished[1] |
Mycobacterium avium | k10 | Acidobacteria | 4,829,781 | 4,350 | [95] |
Mycobacterium bovis | AF212297 | Acidobacteria | 4,345,492 | 3,953 | [96] |
Mycobacterium leprae | TN | Acidobacteria | 3,268,203 | 2,720 | [97] |
Mycobacterium tuberculosis | CDC1551 | Acidobacteria | 4,403,837 | 4,189 | Unpublished[1] |
Mycobacterium tuberculosis | H37Rv | Acidobacteria | 4,411,532 | 3,999 | [98] |
Mycoplasma capricolum | ATCC27343 | Firmicutes Mollicutes | 1,010,023 | 812 | Unpublished[1] |
Mycoplasma gallisepticum | R | Firmicutes Mollicutes | 996,422 | 726 | [99] |
Mycoplasma genitalium | G37 | Firmicutes Mollicutes | 580,076 | 476 | [100] |
Mycoplasma hyopneumoniae | 232 | Firmicutes Mollicutes | 892,758 | 691 | [101] |
Mycoplasma hyopneumoniae | 7448 | Firmicutes Mollicutes | 920,079 | 663 | [102] |
Mycoplasma hyopneumoniae | J | Firmicutes Mollicutes | 897,405 | 665 | [102] |
Mycoplasma mobile | 163K | Firmicutes Mollicutes | 777,079 | 635 | [103] |
Mycoplasma mycoides | SC | Firmicutes Mollicutes | 1,211,703 | 1,016 | [104] |
Mycoplasma penetrans | HF2 | Firmicutes Mollicutes | 1,358,633 | 1,037 | [105] |
Mycoplasma pneumoniae | M129 | Firmicutes Mollicutes | 816,394 | 688 | [106] |
Mycoplasma pulmonis | UAB | Firmicutes Mollicutes | 963,879 | 782 | [107] |
Mycoplasma synoviae | 53 | Firmicutes Mollicutes | 799,476 | 672 | [102] |
Myxococcus xanthus | DK1622 | Proteobacteria delta-epsilon | 9,139,763 | 7,331 | Unpublished[1] |
Neisseria gonorrhoeae | FA1090 | Proteobacteria Betaproteobacteria | 2,153,922 | 2,002 | Unpublished[1] |
Neisseria meningitidis | A | Proteobacteria Betaproteobacteria | 2,184,406 | 2,121 | [108] |
Neisseria meningitidis | B | Proteobacteria Betaproteobacteria | 2,272,360 | 2,063 | [109] |
Neorickettsia sennetsu | Miyayama | Proteobacteria Alphaproteobacteria | 859,006 | 932 | [6] |
Nitrobacter hamburgensis | X14 | Proteobacteria Alphaproteobacteria | 4,406,967 | 3,804 | Unpublished[1] |
Nitrobacter winogradskyi | Nb255 | Proteobacteria Alphaproteobacteria | 3,402,093 | 3,122 | Unpublished[1] |
Nitrosococcus oceani | ATCC19707 | Proteobacteria Gammaproteobacteria | 3,481,691 | 2,976 | Unpublished[1] |
Nitrosomonas europaea | Schmidt | Proteobacteria Betaproteobacteria | 2,812,094 | 2,574 | [110] |
Nitrosospira multiformis | ATCC25196 | Proteobacteria Betaproteobacteria | 3,184,243 | 2,757 | Unpublished[1] |
Nocardia farcinica | IFM10152 | Acidobacteria | 6,021,225 | 5,683 | [111] |
Novosphingobium aromaticivorans | DSM12444 | Proteobacteria Alphaproteobacteria | 3,561,584 | 3,324 | Unpublished[1] |
Oceanobacillus iheyensis | HTE831 | Firmicutes Bacilli | 3,630,528 | 3,496 | [112] |
Parachlamy diaspecies | UWE25 | Chlamydiae/Verrucomicrobia Chlamydiae | 2,414,465 | 2,031 | [113] |
Pasteurella multocida | Pm70 | Proteobacteria Gammaproteobacteria | 2,257,487 | 2,014 | [114] |
Pelagibacter ubique | HTCC1062 | Proteobacteria Alphaproteobacteria | 1,308,759 | 1,354 | [115] |
Pelobacter carbinolicus | DSM2380 | Proteobacteria delta-epsilon | 3,665,893 | 3,119 | Unpublished[1] |
Pelodictyon luteolum | DSM273 | Bacteroidetes/Chlorobi Chlorobi | 2,364,842 | 2,083 | Unpublished[1] |
Photobacterium profundum | SS9 | Proteobacteria Gammaproteobacteria | 4,085,304 | 3,416 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 2,237,943 | 1,997 | Unpublished[1] |
Photorhabdus luminescens | laumondiiTTO1 | Proteobacteria Gammaproteobacteria | 5,688,987 | 4,905 | Unpublished[1] |
Phytoplas maasteris | AYWB | Firmicutes Mollicutes | 706,569 | 671 | Unpublished[1] |
Phytoplas maasteris | OY | Firmicutes Mollicutes | 860,631 | 754 | [116] |
Polaromonas species | JS666 | Proteobacteria Betaproteobacteria | 5,200,264 | 4,817 | Unpublished[1] |
Porphyromonas gingivalis | W83 | Bacteroidetes/Chlorobi Bacteroidetes | 2,343,476 | 1,909 | [117] |
Prochlorococcus marinus | MED4 | Cyanobacteria Prochlorales | 1,657,990 | 1,716 | [118] |
Prochlorococcus marinus | MIT9312 | Cyanobacteria Prochlorales | 1,709,204 | 1,809 | Unpublished[1] |
Prochlorococcus marinus | MIT9313 | Cyanobacteria Prochlorales | 2,410,873 | 2,273 | [118] |
Prochlorococcus marinus | NATL2A | Cyanobacteria Prochlorales | 1,842,899 | 1,890 | Unpublished[1] |
Prochlorococcus marinus | SS120 | Cyanobacteria Prochlorales | 1,751,080 | 1,882 | [119] |
Propionibacterium acnes | KPA171202 | Acidobacteria | 2,560,265 | 2,297 | Unpublished[1] |
Pseudoalteromonas haloplanktis | TAC125 | Proteobacteria Gammaproteobacteria | 3,214,944 | 2,941 | [120] |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 635,328 | 546 | [120] |
Pseudomonas aeruginosa | PAO1 | Proteobacteria Gammaproteobacteria | 6,264,403 | 5,566 | [121] |
Pseudomonas entomophila | L48 | Proteobacteria Gammaproteobacteria | 5,888,780 | 5,168 | Unpublished[1] |
Pseudomonas fluorescens | Pf-5 | Proteobacteria Gammaproteobacteria | 7,074,893 | 6,137 | [122] |
Pseudomonas fluorescens | PfO-1 | Proteobacteria Gammaproteobacteria | 6,438,405 | 5,736 | Unpublished[1] |
Pseudomonas putida | KT2440 | Proteobacteria Gammaproteobacteria | 6,181,863 | 5,350 | [123] |
Pseudomonas syringae | B728a | Proteobacteria Gammaproteobacteria | 6,093,698 | 5,136 | [124] |
Pseudomonas syringae | DC3000 | Proteobacteria Gammaproteobacteria | 6,397,126 | 5,470 | [125] |
Pseudomonas syringae | phaseolicola1448A | Proteobacteria Gammaproteobacteria | 5,928,787 | 4,983 | Unpublished[1] |
Psychrobacter arcticum | 273-4 | Proteobacteria Gammaproteobacteria | 2,650,701 | 2,147 | Unpublished[1] |
Psychrobacter cryohalolentis | K5 | Proteobacteria Gammaproteobacteria | 41,221 | 44 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 3,059,876 | 2,467 | Unpublished[1] |
Ralstonia eutropha | JMP134 | Proteobacteria Betaproteobacteria | 3,806,533 | 3,439 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,726,152 | 2,407 | Unpublished[1] |
Ralstonia metallidurans | CH34 | Proteobacteria Betaproteobacteria | 3,928,089 | 3,601 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,580,084 | 2,313 | Unpublished[1] |
Ralstonia solanacearum | GMI1000 | Proteobacteria Betaproteobacteria | 3,716,413 | 3,441 | [126] |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,094,509 | 1,679 | [126] |
Rhizobium etli | CFN42 | Proteobacteria Alphaproteobacteria | 4,381,608 | 4,067 | [127] |
Rhizobium leguminosarum | viciae3841 | Proteobacteria Alphaproteobacteria | 7,751,309 | 4,746 | Unpublished[1] |
Rhodobacter sphaeroides | 2.4.1 | Proteobacteria Alphaproteobacteria | 3,188,609 | 3,022 | Unpublished[1] |
Unspecified | Unspecified | Proteobacteria Alphaproteobacteria | 943,016 | 835 | Unpublished[1] |
Rhodoferax ferrireducens | DSM15236 | Proteobacteria Betaproteobacteria | 4,712,337 | 4,170 | Unpublished[1] |
Rhodopirellula baltica | strain1 | Planctomycetes Planctomycetacia | 7,145,576 | 7,325 | Unpublished[1] |
Rhodopseudomonas palustris | BisB18 | Proteobacteria Alphaproteobacteria | 5,513,844 | 4,886 | Unpublished[1] |
Rhodopseudomonas palustris | BisB5 | Proteobacteria Alphaproteobacteria | 4,892,717 | 4,397 | Unpublished[1] |
Rhodopseudomonas palustris | CGA009 | Proteobacteria Alphaproteobacteria | 5,459,213 | 4,833 | [128] |
Rhodopseudomonas palustris | HaA2 | Proteobacteria Alphaproteobacteria | 5,331,656 | 4,683 | Unpublished[1] |
Rhodospirillum rubrum | ATCC11170 | Proteobacteria Alphaproteobacteria | 4,352,825 | 3,791 | Unpublished[1] |
Rickettsia bellii | RML369-C | Proteobacteria Alphaproteobacteria | 1,522,076 | 1,429 | Unpublished[1] |
Rickettsia conorii | Malish7 | Proteobacteria Alphaproteobacteria | 1,268,755 | 1,374 | [129] |
Rickettsia felis | URRWXCal2 | Proteobacteria Alphaproteobacteria | 1,485,148 | 1,400 | [130] |
Rickettsia prowazekii | Madrid-E | Proteobacteria Alphaproteobacteria | 1,111,523 | 834 | [131] |
Rickettsia typhi | Wilmington | Proteobacteria Alphaproteobacteria | 1,111,496 | 838 | [132] |
Rubrobacter xylanophilus | DSM9941 | Acidobacteria | 3,225,748 | 3,140 | Unpublished[1] |
Saccharophagus degradans | Feb-40 | Proteobacteria Gammaproteobacteria | 5,057,531 | 4,008 | Unpublished[1] |
Salinibacter ruber | DSM13855 | Bacteroidetes/Chlorobi Bacteroidetes | 3,551,823 | 2,801 | [133] |
Salmonella enterica | ATCC9150 | Proteobacteria Gammaproteobacteria | 4,585,229 | 4,093 | [134] |
Salmonella enterica | SCB67 | Proteobacteria Gammaproteobacteria | 4,755,700 | 4,445 | [135] |
Salmonella enterica | Ty2 | Proteobacteria Gammaproteobacteria | 4,791,961 | 4,323 | [136] |
Salmonella enterica | typhiCT18 | Proteobacteria Gammaproteobacteria | 4,809,037 | 4,600 | [137] |
Salmonella typhimurium | LT2 | Proteobacteria Gammaproteobacteria | 4,857,432 | 4,452 | [138] |
Shewanella denitrificans | OS217 | Proteobacteria Gammaproteobacteria | 4,545,906 | 3,754 | Unpublished[1] |
Shewanella oneidensis | MR1 | Proteobacteria Gammaproteobacteria | 4,969,803 | 4,630 | [139] |
Shigella boydii | Sb227 | Proteobacteria Gammaproteobacteria | 4,519,823 | 4,142 | [140] |
Shigella dysenteriae | Sd197 | Proteobacteria Gammaproteobacteria | 4,369,232 | 4,277 | [140] |
Shigella flexneri | 2457T | Proteobacteria Gammaproteobacteria | 4,599,354 | 4,073 | [141] |
Shigella flexneri | 2a301 | Proteobacteria Gammaproteobacteria | 4,607,203 | 4,436 | [142] |
Shigella sonnei | Ss046 | Proteobacteria Gammaproteobacteria | 4,825,265 | 4,224 | [140] |
Silicibacter pomeroyi | DSS3 | Proteobacteria Alphaproteobacteria | 4,109,442 | 3,810 | [143] |
Silicibacter species | TM1040 | Proteobacteria Alphaproteobacteria | 3,200,938 | 3,030 | Unpublished[1] |
Sinorhizobium medicae | WSM419 | Alphaproteobacteria | 3,781,904 | 3,635 | [144] |
Sinorhizobium meliloti | Rm1021 | Alphaproteobacteria | 3,654,135 | 3,341 | [145] |
Sodalis glossinidius | morsitans | Proteobacteria Gammaproteobacteria | 4,171,146 | 2,432 | [146] |
Sphingopyxis alaskensis | RB2256 | Proteobacteria Alphaproteobacteria | 3,345,170 | 3,165 | Unpublished[1] |
Staphylococcus aureus | COL | Firmicutes Bacilli | 2,809,422 | 2,673 | [147] |
Staphylococcus aureus | MRSA252 | Firmicutes Bacilli | 2,902,619 | 2,744 | [35] |
Staphylococcus aureus | MSSA476 | Firmicutes Bacilli | 2,799,802 | 2,619 | [35] |
Staphylococcus aureus | Mu50 | Firmicutes Bacilli | 2,878,529 | 2,699 | [148] |
Staphylococcus aureus | MW2 | Firmicutes Bacilli | 2,820,462 | 2,632 | [149] |
Staphylococcus aureus | N315 | Firmicutes Bacilli | 2,814,816 | 2,593 | [148] |
Staphylococcus aureus | NCTC8325 | Firmicutes Bacilli | 2,821,361 | 2,892 | Unpublished[1] |
Staphylococcus aureus | RF122 | Firmicutes Bacilli | 2,742,531 | 2,589 | Unpublished[1] |
Staphylococcus aureus | USA300 | Firmicutes Bacilli | 2,872,769 | 2,560 | [150] |
Staphylococcus epidermidis | ATCC12228 | Firmicutes Bacilli | 2,499,279 | 2,419 | Unpublished[1] |
Staphylococcus epidermidis | RP62A | Firmicutes Bacilli | 2,616,530 | 2,494 | [147] |
Staphylococcus haemolyticus | JCSC1435 | Firmicutes Bacilli | 2,685,015 | 2,678 | [151] |
Staphylococcus saprophyticus | saprophyticus | Firmicutes Bacilli | 2,516,575 | 2,446 | [152] |
Streptococcus agalactiae | A909 | Firmicutes Bacilli | 2,127,839 | 1,996 | [153] |
Streptococcus agalactiae | NEM316 | Firmicutes Bacilli | 2,211,485 | 2,134 | [154] |
Streptococcus agalactiae | 2603 V/R | Firmicutes Bacilli | 2,160,267 | 2,124 | [155] |
Streptococcus mutans | UAB159 | Firmicutes Bacilli | 2,030,921 | 1,960 | [156] |
Streptococcus pneumoniae | R6 | Firmicutes Bacilli | 2,038,615 | 2,043 | [157] |
Streptococcus pneumoniae | TIGR4 | Firmicutes Bacilli | 2,160,842 | 2,125 | [158] |
Streptococcus pyogenes | M5Manfredo | Firmicutes Bacilli | 1,841,271 | Unpublished[1] | |
Streptococcus pyogenes | MGAS10270 | Firmicutes Bacilli | 1,928,252 | 1,987 | [159] |
Streptococcus pyogenes | MGAS10394 | Firmicutes Bacilli | 1,899,877 | 1,886 | [160] |
Streptococcus pyogenes | MGAS10750 | Firmicutes Bacilli | 1,937,111 | 1,979 | [159] |
Streptococcus pyogenes | MGAS2096 | Firmicutes Bacilli | 1,860,355 | 1,898 | [159] |
Streptococcus pyogenes | MGAS315 | Firmicutes Bacilli | 1,900,521 | 1,865 | [161] |
Streptococcus pyogenes | MGAS5005 | Firmicutes Bacilli | 1,838,554 | 1,865 | [162] |
Streptococcus pyogenes | MGAS6180 | Firmicutes Bacilli | 1,897,573 | 1,894 | [163] |
Streptococcus pyogenes | MGAS8232 | Firmicutes Bacilli | 1,895,017 | 1,845 | [164] |
Streptococcus pyogenes | MGAS9429 | Firmicutes Bacilli | 1,836,467 | 1,877 | [159] |
Streptococcus pyogenes | SF370 | Firmicutes Bacilli | 1,852,441 | 1,696 | [165] |
Streptococcus pyogenes | SSI1 | Firmicutes Bacilli | 1,894,275 | 1,861 | [166] |
Streptococcus thermophilus | CNRZ1066 | Firmicutes Bacilli | 1,796,226 | 1,915 | [167] |
Streptococcus thermophilus | LMG18311 | Firmicutes Bacilli | 1,796,846 | 1,889 | [167] |
Streptomyces avermitilis | MA4680 | Acidobacteria | 9,025,608 | 7,577 | [168] |
Streptomyces coelicolor | A3 | Acidobacteria | 8,667,507 | 7,825 | [169] |
Symbiobacterium thermophilum | Strain | Acidobacteria | 3,566,135 | 3,337 | [170] |
Synechococcus elongatus | PCC6301 | Cyanobacteria Chroococcales | 2,696,255 | 2,525 | Unpublished[1] |
Synechococcus elongatus | PCC7942 | Cyanobacteria Chroococcales | 2,695,903 | 2,611 | Unpublished[1] |
Synechococcus sp | WH8102 | Cyanobacteria Chroococcales | 2,434,428 | 2,526 | [171] |
Synechococcus species | CC9605 | Cyanobacteria Chroococcales | 2,510,659 | 2,638 | Unpublished[1] |
Synechococcus species | CC9902 | Cyanobacteria Chroococcales | 2,234,828 | 2,304 | Unpublished[1] |
Synechocystis species | PCC6803 | Cyanobacteria Chroococcales | 3,573,470 | 3,167 | [172] |
Syntrophus aciditrophicus | SB | Proteobacteria delta-epsilon | 3,179,300 | 3,168 | Unpublished[1] |
Thermoanaerobacter tengcongensis | MB4T | Firmicutes Clostridia | 2,689,445 | 2,588 | Unpublished[1] |
Thermobifida fusca | YX | Acidobacteria | 3,642,249 | 3,110 | Unpublished[1] |
Thermosynechococcus elongatus | bp1 | Cyanobacteria Chroococcales | 2,593,857 | 2,475 | Unpublished[1] |
Thermotoga maritima | MSB8 | Thermotogae | 1,860,725 | 1,846 | [173] |
Thermus thermophilus | HB27 | Deinococcus-Thermus Deinococci | 1,894,877 | 1,982 | [174] |
Thermus thermophilus | HB8 | Deinococcus-Thermus Deinococci | 1,849,742 | 1,973 | Unpublished[1] |
Thiobacillus denitrificans | ATCC25259 | Proteobacteria Betaproteobacteria | 2,909,809 | 2,827 | Unpublished[1] |
Thiomicrospira crunogena | XCL2 | Proteobacteria Gammaproteobacteria | 2,427,734 | 2,192 | Unpublished[1] |
Thiomicrospira denitrificans | ATCC33889 | Proteobacteria delta-epsilon | 2,201,561 | 2,097 | Unpublished[1] |
Treponema denticola | ATCC35405 | Spirochaetes | 2,843,201 | 2,767 | [175] |
Treponema pallidum | Nichols | Spirochaetes | 1,138,011 | 1,031 | [176] |
Tropheryma whippelii | TW0827 | Acidobacteria | 925,938 | 784 | Unpublished[1] |
Tropheryma whippelii | Twist | Acidobacteria | 927,303 | 808 | [177] |
Ureaplasma urealyticum | serovar3 | Firmicutes Mollicutes | 751,719 | 611 | [178] |
Vibrio cholerae | N16961 (chromosome I) | Proteobacteria Gammaproteobacteria | 2,961,149 | 2,736 | [179] |
N16961 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,072,315 | 1,092 | [179] | |
Vibrio fischeri | ES114 (chromosome I) | Proteobacteria Gammaproteobacteria | 2,906,179 | 2,575 | [180] |
ES114 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,332,022 | 1,172 | [180] | |
Vibrio parahaemolyticus | RIMD2210633 (chromosome I) | Proteobacteria Gammaproteobacteria | 3,288,558 | 3,080 | [181] |
RIMD2210633 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,877,212 | 1,752 | [181] | |
Vibrio vulnificus | CMCP6 (chromosome I) | Proteobacteria Gammaproteobacteria | 3,281,944 | 2,973 | [182] |
CMCP6 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,844,853 | 1,565 | [182] | |
Vibrio vulnificus | YJ016 (chromosome I) | Proteobacteria Gammaproteobacteria | 3,354,505 | 3,262 | [183] |
YJ016 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,857,073 | 1,697 | [183] | |
Wigglesworthia glossinidia | Strain | Proteobacteria Gammaproteobacteria | 697,724 | 611 | [184] |
Wolbachia endosymbiont | TRS | Proteobacteria Alphaproteobacteria | 1,080,084 | 805 | [185] |
Wolbachia pipientis | wMel | Proteobacteria Alphaproteobacteria | 1,267,782 | 1,195 | [186] |
Wolinella succino | DSMZ1740 | Proteobacteria delta-epsilon | 2,110,355 | 2,044 | [187] |
Xanthomonas axonopodis | citri306 | Proteobacteria Gammaproteobacteria | 5,175,554 | 4,312 | [188] |
Xanthomonas campestris | 8004 | Proteobacteria Gammaproteobacteria | 5,148,708 | 4,273 | [189] |
Xanthomonas campestris | 8510 | Proteobacteria Gammaproteobacteria | 5,178,466 | 4,487 | [190] |
Xanthomonas campestris | ATCC33913 | Proteobacteria Gammaproteobacteria | 5,076,188 | 4,181 | [188] |
Xanthomonas oryzae | KACC10331 | Proteobacteria Gammaproteobacteria | 4,941,439 | 4,637 | [191] |
Xanthomonas oryzae | MAFF311018 | Proteobacteria Gammaproteobacteria | 4,940,217 | 4,372 | Unpublished[1] |
Xylella fastidiosa | 9a5c | Proteobacteria Gammaproteobacteria | 2,679,306 | 2,766 | [192] |
Xylella fastidiosa | Temecula1 | Proteobacteria Gammaproteobacteria | 2,519,802 | 2,034 | [193] |
Yersinia pestis | Antiqua | Proteobacteria Gammaproteobacteria | 4,702,289 | 4,167 | [194] |
Yersinia pestis | CO-92BiovarOrientalis | Proteobacteria Gammaproteobacteria | 4,653,728 | 4,008 | [195] |
Yersinia pestis | KIM | Proteobacteria Gammaproteobacteria | 4,600,755 | 4,090 | [196] |
Yersinia pestis | Mediaevalis | Proteobacteria Gammaproteobacteria | 4,595,065 | 3,895 | [197] |
Yersinia pseudotuberculosis | IP32953 | Proteobacteria Gammaproteobacteria | 4,744,671 | 3,974 | [198] |
Zymomonas mobilis | ZM4 | Proteobacteria Alphaproteobacteria | 2,056,416 | 1,998 | [199] |