Structural bioinformatics

From Wikipedia, the free encyclopedia

Structural bioinformatics refers to the branch of bioinformatics which is related to the analysis and prediction of the three-dimensional structure of biological macromolecules such as proteins. The term structural has the same meaning as in structural biology, and structural bioinformatics can be seen as computational structural biology.

Genomics topics

Genome project | Paleopolyploidy | Glycomics | Human Genome Project | Proteomics | Metabolomics

Chemogenomics | Structural genomics | Pharmacogenetics | Pharmacogenomics | Toxicogenomics | Computational genomics

Bioinformatics | Cheminformatics | Systems biology

[edit] See also

• MMDB
• Protein Data Bank
• SCOP
• STING

[edit] References

[edit] Books

• Bourne, Weissig (2003) Structural Bioinformatics, Wiley ISBN 0-471-20199-5

[edit] Hallmark publications

• Richardson, J.S. (1981) "The anatomy and taxonomy of protein structure". Adv. Protein Chem., 34, 167-339.
• G.N. Ramachandran, C. Ramakrishnan, and V. Sasisekharan. "Stereochemistry of polypeptide chain configurations". J. Mol. Biol., 7:95-9, 1963.
• G.N. Ramachandran and V. Sasisekharan. "Conformation of polypeptides and proteins". Adv. Protein Chem., 23:283-438, 1968.

[edit] External links

[edit] Databases

• MMDB
• SCOP

[edit] Software

• STING
• PyMOL viewer
• VMD viewer
• MolMol viewer
• SPDBV DeepView viewer
• STRIDE
• PROCHECK, a web service
• iMolTalk, a web service
• Jmol, a molecular viewer Java applet with rasmol-like scripting capabilities and Javascript interaction
• PROPKA, rapid prediction of protein pKa values based on empirical structure/function relationships
• CARA - Computer Aided Resonance Assignment
• StarBiochem, a java protein viewer, features direct search of protein databank