Small nucleolar RNA SNORA44

From Wikipedia, the free encyclopedia

Small nucleolar RNA SNORA44
Template:Abbreviation
Type: Gene; snRNA; guide; HACA-box;
2° structure: Predicted; PFOLD; Moxon SJ
Seed alignment: Moxon SJ
Avg length: 127.5 nucleotides
Avg identity: 81%

Small nucleolar RNA SNORA44 (also known as ACA44) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'. ACA44 was originally cloned from HeLa cells [1] and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA44 is predicted to guide the pseudouridylation of U822 and U686 of 18S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine. snoRNA ACA44 is is homologous to the mouse snoRNA sequence MBI-64 described in [2].

[edit] References

  1. ^ Kiss AM, Jady BE, Bertrand E, Kiss T (2004). "Human box H/ACA pseudouridylation guide RNA machinery". Mol. Cell. Biol. 24 (13): 5797–807. doi:10.1128/MCB.24.13.5797-5807.2004. PMID 15199136. 
  2. ^ Hüttenhofer A, Kiefmann M, Meier-Ewert S, et al (2001). "RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse". EMBO J. 20 (11): 2943–53. doi:10.1093/emboj/20.11.2943. PMID 11387227. 

[edit] External links