From Wikipedia, the free encyclopedia
| Small Nucleolar RNA SNORD111 |
 |
| Type: |
Gene;snRNA;snoRNA;CD-box; |
| 2° structure: |
INFERNAL |
| Seed alignment: |
Predicted; RNAalifold; Daub J |
| Avg length: |
80.4 nucleotides |
| Avg identity: |
71% |
|
Small Nucleolar RNA SNORD111 (also known as HBII-82) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
SNORD111 belongs to the C/D box class of snoRNAs which contain the C (UGAUGA) and D (CUGA) box motifs. Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs [1]. SNORD111 is predicted to guide the 2'O-ribose methylation of 28S ribosomal RNA (rRNA) at residue G3923 [3].
[edit] References
- [1] Galardi S, Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I; (2002). "Purified box C/D snoRNPs are able to reproduce site-specific2'-O-methylation of target RNA in vitro.". Mol Cell Biol 22: 6663–6668. doi:10.1128/MCB.22.19.6663-6668.2002. PMID 12215523.
- [2] Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H,Bachellerie JP, Brosius J; (2001). "RNomics: an experimental approach that identifies 201 candidates fornovel, small, non-messenger RNAs in mouse.". EMBO J 20: 2943–2953. doi:10.1093/emboj/20.11.2943. PMID 11387227.
- [3] Lestrade L, Weber MJ; (2006). "snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D boxsnoRNAs.". Nucleic Acids Res 34: D158–D162. doi:10.1093/nar/gkj002. PMID 16381836.
[edit] External links
