Luteovirus cap-independent translation element (BTE)

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Luteovirus cap-independent translation element (BTE)

Type:	Cis-reg;
2° structure:	Published; PubMed
Seed alignment:	PubMed
Avg length:	101.2 nucleotides
Avg identity:	73%

The Luteovirus cap-independent translation element (BTE) is an RNA element found in the 3' UTR of barley yellow dwarf virus (BYDV), bean leafroll virus and soybean dwarf virus. This element mediates translation of genomic RNA and subgenomic RNA1 (sgRNA1).^[1]

In terms of its secondary structure the BTE contains four stem-loops called SL-I to SL-IV.

BTE has been found to bind to eIF4G and weakly to eIF4E (proteins involved in translation initiation). BTE allows translation initiation of an mRNA without a 7mG cap (required for translation in most eukaryotic mRNA). Other forms of cap-independent translation elements (CITE) exist (primarily in viruses, but also in some host mRNA; notably many heat shock mRNA lack a 7mG cap but are still translated). The general purpose of BTE and these other CITE's is to get the ribosome to begin translation without the 7mG cap. In the case of BTE it "tricks" eIF4F (eIF4E, eIF4G are parts of eIF4F) into "telling" the ribosome that a 7mG cap is present.

[edit] References

^ Shen, R; Miller WA (2004). "Subgenomic RNA as a riboregulator: negative regulation of RNA replication by Barley yellow dwarf virus subgenomic RNA 2". Virology 327: 196–205. doi:10.1016/j.virol.2004.06.025. PMID 15351207.