Lamm equation

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The Lamm equation[1] describes the sedimentation and diffusion of a solute under ultracentrifugation in traditional sector-shaped cells. (Cells of other shapes require much more complex equations.)

The Lamm equation can be written:[2][3]

\frac{\partial c}{\partial t} = D \left[ \left( \frac{\partial^{2} c}{\partial r^2} \right) + \frac{1}{r} \left( \frac{\partial c}{\partial r} \right) \right] - s \omega^{2} \left[ r \left( \frac{\partial c}{\partial r} \right) + 2c \right]

where c is the solute concentration, t and r are the time and radius, and the parameters D, s, and ω represent the solute diffusion constant, sedimentation coefficient and the rotor angular velocity, respectively. The first and second terms on the right-hand side of the Lamm equation are proportional to D and sω2, respectively, and describe the competing processes of diffusion and sedimentation. Whereas sedimentation seeks to concentrate the solute near the outer radius of the cell, diffusion seeks to equalize the solute concentration throughout the cell. The diffusion constant D can be estimated from the hydrodynamic radius and shape of the solute, whereas the buoyant mass mb can be determined from the ratio of s and D

\frac{s}{D} = \frac{m_{b}}{k_{B}T}

where kBT is the thermal energy, i.e., Boltzmann's constant kB multiplied by the temperature T in kelvin.

Solute molecules cannot pass through the inner and outer walls of the cell, resulting in the boundary conditions on the Lamm equation

D \left( \frac{\partial c}{\partial r} \right) - s \omega^{2} r c = 0

at the inner and outer radii, ra and rb, respectively. By spinning samples at constant angular velocity ω and observing the variation in the concentration c(r,t), one may estimate the parameters s and D and, thence, the buoyant mass and shape of the solute.

Contents

[edit] Derivation of the Lamm equation

[edit] Faxén solution (no boundaries, no diffusion)

[edit] References and notes

  1. ^ O Lamm: (1929) "Die differentialgleichung der ultrazentrifugierung" Arkiv für matematik, astronomi och fysik 21B No. 2, 1-4
  2. ^ SI Rubinow (2002 (1975)). Introduction to mathematical biology. Courier/Dover Publications, pp. 235-244. ISBN 0486425320. 
  3. ^ Jagannath Mazumdar (1999). An Introduction to Mathematical Physiology and Biology. Cambridge UK: Cambridge University Press, pp. 33 ff. ISBN 0521646758. 

[edit] See also