Template:GNF Protein box/doc

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This is a documentation subpage for Template:GNF Protein box (see that page for the template itself).
It contains usage information, categories and other content that is not part of the original template page.

Note: Modified version of the standard Template:Protein. AndrewGNF 01:38, 7 March 2007 (UTC)

Eventually I see integrating this into the main Template:Protein infobox, but I'm keeping it separate for a moment to avoid breaking anything there. AndrewGNF 19:06, 9 March 2007 (UTC)

1 Usage
2 Parameter explanations
3 See also

[edit] Usage

To use this template, copy the following text and paste it at the top of your article. Fill in as many fields as possible, but don't worry if some information is missing. For an example of a filled-out template, see ITK (gene).

{{GNF_Protein_box
| Name = 
| image = 
| image_source = 
| PDB =  
| HGNCid = 
| MGIid = 
| Symbol = 
| AltSymbols = 
| OMIM = 
| ECnumber = 
| Homologene = 
| GeneAtlas_image = 
| Function = 
| Orthologs =
}}

[edit] Parameter explanations

[edit] Name

This field lists the full name of the protein, ideally from a nomenclature authority like HGNC. Note that there is a separate symbol field below.

[edit] image

This field specifies an image file that displays a two-dimensional view of the three-dimensional structure, typically created from a PDB file.
If an image is specified, then the image_source parameter should be used to specify the structure used to generate the image, preferably using the Template:PDB2.

[edit] PDB

This field is used to display a list of available PDB entries. Enter as a list of PDB templates, e.g., "{{PDB2|1SNX}}, {{PDB2|2ETZ}}"

[edit] HGNCid

This field lists the unique identifier from the HGNC (HUGO Gene Nomenclature Committee).

[edit] MGIid

This field lists the unique identifier from the Mouse Genome Informatics site.

[edit] Symbol

This field lists the official symbol of the protein, ideally from a nomenclature authority like HGNC. Note that there is a separate Name field above.

[edit] AltSymbols

This field lists other symbols that are used in public databases or in the literature.

[edit] OMIM

This field lists the unique identifier(s) in the Mendelian Inheritance in Man database.

[edit] ECnumber

This field lists the EC number.

[edit] Homologene

This field lists the unique identifer in the HomoloGene database.

[edit] GeneAtlas_image#

This field gives the filename of a GeneAtlas expression pattern, showing where the gene is expressed across diverse anatomic tissues. Replace # with a value 1 to 3.

[edit] Function

This field lists gene function, typically derived from Gene Ontology. This entry can be populated as a list of GNF_GO templates, e.g., "{{GNF_GO|id=GO:0000166}}{{GNF_GO|id=GO:0004715}}"

[edit] Component

This field lists gene component function, typically derived from Gene Ontology. This entry can be populated as a list of GNF_GO templates, e.g., "{{GNF_GO|id=GO:0000166}}{{GNF_GO|id=GO:0004715}}"

[edit] Process

This field lists gene process function, typically derived from Gene Ontology. This entry can be populated as a list of GNF_GO templates, e.g., "{{GNF_GO|id=GO:0000166}}{{GNF_GO|id=GO:0004715}}"

[edit] Orthologs

This field shows species-specific identifiers from multiple organisms. This field should use the GNF_Ortholog_box template.

[edit] See also

Categories: Template documentation