COL11A1

From Wikipedia, the free encyclopedia

Collagen, type XI, alpha 1

Identifiers

COL11A1; CO11A1; COLL6; STL2

External IDs

OMIM: 120280 MGI: 88446 HomoloGene: 56389

Gene ontology
Molecular Function:	• extracellular matrix structural constituent • protein binding, bridging
Cellular Component:	• collagen • collagen type XI • cytoplasm
Biological Process:	• cartilage condensation • phosphate transport • visual perception • sensory perception of sound • extracellular matrix organization and biogenesis

RNA expression pattern

More reference expression data

Orthologs

Human

Mouse

Refseq

NM_001854 (mRNA)
NP_001845 (protein)

NM_007729 (mRNA)
NP_031755 (protein)

Location

Chr 1: 103.11 - 103.35 Mb

Chr 3: 114.02 - 114.21 Mb

Pubmed search

[1]

[2]

Collagen, type XI, alpha 1, also known as COL11A1, is a human gene.^[1]

This gene encodes one of the two alpha chains of type XI collagen, a minor fibrillar collagen. Type XI collagen is a heterotrimer but the third alpha chain is a post-translationally modified alpha 1 type II chain. Mutations in this gene are associated with type II Stickler syndrome and with Marshall syndrome. Three transcript variants encoding different isoforms have been identified for this gene.^[1]

[edit] References

^ ^a ^b Entrez Gene: COL11A1 collagen, type XI, alpha 1.

[edit] Further reading

Yoshioka H, Ramirez F (1990). "Pro-alpha 1(XI) collagen. Structure of the amino-terminal propeptide and expression of the gene in tumor cell lines.". J. Biol. Chem. 265 (11): 6423–6. PMID 1690726.
Hanson IM, Gorman P, Lui VC, et al. (1990). "The human alpha 2(XI) collagen gene (COL11A2) maps to the centromeric border of the major histocompatibility complex on chromosome 6.". Genomics 5 (4): 925–31. PMID 2591970.
Bernard M, Yoshioka H, Rodriguez E, et al. (1988). "Cloning and sequencing of pro-alpha 1 (XI) collagen cDNA demonstrates that type XI belongs to the fibrillar class of collagens and reveals that the expression of the gene is not restricted to cartilagenous tissue.". J. Biol. Chem. 263 (32): 17159–66. PMID 3182841.
Henry I, Bernheim A, Bernard M, et al. (1989). "Mapping of a human fibrillar collagen gene, pro alpha 1 (XI) (COL11A1), to the p21 region of chromosome 1.". Genomics 3 (1): 87–90. PMID 3220479.
Keene DR, Oxford JT, Morris NP (1995). "Ultrastructural localization of collagen types II, IX, and XI in the growth plate of human rib and fetal bovine epiphyseal cartilage: type XI collagen is restricted to thin fibrils.". J. Histochem. Cytochem. 43 (10): 967–79. PMID 7560887.
Zhidkova NI, Justice SK, Mayne R (1995). "Alternative mRNA processing occurs in the variable region of the pro-alpha 1(XI) and pro-alpha 2(XI) collagen chains.". J. Biol. Chem. 270 (16): 9486–93. PMID 7721876.
Yoshioka H, Greenwel P, Inoguchi K, et al. (1995). "Structural and functional analysis of the promoter of the human alpha 1(XI) collagen gene.". J. Biol. Chem. 270 (1): 418–24. PMID 7814404.
Dharmavaram RM, Baldwin CT, Reginato AM, Jimenez SA (1993). "Amplification of cDNAs for human cartilage-specific types II, IX and XI collagens from chondrocytes and Epstein-Barr virus-transformed lymphocytes.". Matrix 13 (2): 125–33. PMID 8388073.
Richards AJ, Yates JR, Williams R, et al. (1997). "A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha 1 (XI) collagen.". Hum. Mol. Genet. 5 (9): 1339–43. PMID 8872475.
Shrivastava A, Radziejewski C, Campbell E, et al. (1998). "An orphan receptor tyrosine kinase family whose members serve as nonintegrin collagen receptors.". Mol. Cell 1 (1): 25–34. PMID 9659900.
Annunen S, Körkkö J, Czarny M, et al. (2000). "Splicing mutations of 54-bp exons in the COL11A1 gene cause Marshall syndrome, but other mutations cause overlapping Marshall/Stickler phenotypes.". Am. J. Hum. Genet. 65 (4): 974–83. PMID 10486316.
Fischer H, Salahshor S, Stenling R, et al. (2002). "COL11A1 in FAP polyps and in sporadic colorectal tumors.". BMC Cancer 1: 17. PMID 11707154.
Jun AS, Liu SH, Koo EH, et al. (2001). "Microarray analysis of gene expression in human donor corneas.". Arch. Ophthalmol. 119 (11): 1629–34. PMID 11709013.
Urabe K, Jingushi S, Ikenoue T, et al. (2002). "Immature osteoblastic cells express the pro-alpha2(XI) collagen gene during bone formation in vitro and in vivo.". J. Orthop. Res. 19 (6): 1013–20. doi:10.1016/S0736-0266(01)00043-2. PMID 11780999.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMID 12477932.
Melkoniemi M, Koillinen H, Männikkö M, et al. (2003). "Collagen XI sequence variations in nonsyndromic cleft palate, Robin sequence and micrognathia.". Eur. J. Hum. Genet. 11 (3): 265–70. doi:10.1038/sj.ejhg.5200950. PMID 12673280.
Matsuo N, Yu-Hua W, Sumiyoshi H, et al. (2003). "The transcription factor CCAAT-binding factor CBF/NF-Y regulates the proximal promoter activity in the human alpha 1(XI) collagen gene (COL11A1).". J. Biol. Chem. 278 (35): 32763–70. doi:10.1074/jbc.M305599200. PMID 12805369.
Poulson AV, Hooymans JM, Richards AJ, et al. (2004). "Clinical features of type 2 Stickler syndrome.". J. Med. Genet. 41 (8): e107. doi:10.1136/jmg.2004.018382. PMID 15286167.
Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMID 16344560.
Majava M, Hoornaert KP, Bartholdi D, et al. (2007). "A report on 10 new patients with heterozygous mutations in the COL11A1 gene and a review of genotype-phenotype correlations in type XI collagenopathies.". Am. J. Med. Genet. A 143 (3): 258–64. doi:10.1002/ajmg.a.31586. PMID 17236192.