Align-m
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Align-m is a multiple sequence alignment program written by Ivo Van Walle.
Align-m has the ability to accomplish the following tasks:
- Multiple sequence alignment
- Include extra information to guide the sequence alignment
- Multiple structure alignment
- Homology modeling by (iteratively) combining sequence and structure alignment data
- 'Filtering' of Blast or other pairwise alignments
- Combining many alignments into 1 consensus
- Multiple genome alignment (can cope with rearrangements)