Recurrence plot

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In descriptive statistics and chaos theory, a recurrence plot (RP) is a plot showing, for a given moment in time, the times at which a phase space trajectory visits roughly the same area in the phase space. In other words, it is a graph of

\vec{x}(i)\approx \vec{x}(j),\,

showing i on a horizontal axis and j on a vertical axis, where \vec{x} is a phase space trajectory.

Contents

[edit] Background

Natural processes can have a distinct recurrent behaviour, e.g. periodicities (as seasonal or Milankovich cycles), but also irregular cyclicities (as El Niño Southern Oscillation). Moreover, the recurrence of states, in the meaning that states are again arbitrarily close after some time of divergence, is a fundamental property of deterministic dynamical systems and is typical for nonlinear or chaotic systems (cf. Poincaré recurrence theorem). The recurrence of states in nature has been known for a long time and has also been discussed in early work (e.g. Henri Poincaré 1890).

[edit] Detailed description

Eckmann et al. (1987) introduced recurrence plots, which can visualize the recurrence of states in a phase space. Usually, a phase space does not have a low enough dimension (two or three) to be pictured. Higher-dimensional phase spaces can only be visualized by projection into the two or three-dimensional sub-spaces. However, Eckmann's tool enables us to investigate the m-dimensional phase space trajectory through a two-dimensional representation of its recurrences. Such recurrence of a state at time i at a different time j is pictured within a two-dimensional squared matrix with black and white dots, where black dots mark a recurrence, and both axes are time axes. This representation is called recurrence plot. Such an RP can be mathematically expressed as

\mathbf{R}(i,j) = \Theta(\varepsilon - || \vec{x}(i) - \vec{x}(j)||), \quad \vec{x}(i) \in \Bbb{R}^m, \quad i, j=1, \dots, N,

where N is the number of considered states \vec{x}(i), \varepsilon is a threshold distance, || \cdot || a norm (e.g. Euclidean norm) and \Theta( \cdot ) the Heaviside step function. If only a time series is available, the phase space can be reconstructed by using a time delay embedding (see Takens' theorem):

\vec{x}(i) = (u(i), u(i+\tau), \ldots, u(i+\tau(m-1)),

where u(i) is the time series, m the embedding dimension and τ the time delay.

Caused by characteristic behaviour of the phase space trajectory, a recurrence plot contains typical small-scale structures, as single dots, diagonal lines and vertical/horizontal lines (or a mixture of the latter, which combines to extended clusters). The large-scale structure, also called texture, can be visually characterised by homogenous, periodic, drift or disrupted. The visual appearance of an RP gives hints about the dynamics of the system.

Typical examples of recurrence plots (top row: time series (plotted over time); bottom row: corresponding recurrence plots). From left to right: uncorrelated stochastic data (white noise), harmonic oscillation with two frequencies, chaotic data with linear trend (logistic map) and data from an auto-regressive process.
Typical examples of recurrence plots (top row: time series (plotted over time); bottom row: corresponding recurrence plots). From left to right: uncorrelated stochastic data (white noise), harmonic oscillation with two frequencies, chaotic data with linear trend (logistic map) and data from an auto-regressive process.

The small-scale structures in RPs are used by the recurrence quantification analysis (Zbilut & Webber 1992; Marwan et al. 2002). This quantification allows to describe the RPs in a quantitative way, and to study transitions or nonlinear parameters of the system. In contrast to the heuristic approach of the recurrence quantification analysis, which depends on the choice of the embedding parameters, some dynamical invariants as correlation dimension, K2 entropy or mutual information, which are independent on the embedding, can also be derived from recurrence plots. The base for these dynamical invariants are the recurrence rate and the distribution of the lengths of the diagonal lines.

Close returns plots are similar to recurrence plots. The difference is that the relative time between recurrences is used for the y-axis (instead of absolute time).

The main advantage of recurrence plots is that they provide useful information even for short and non-stationary data, where other methods fail.

[edit] Extensions

Multivariate extensions of recurrence plots were developed as cross recurrence plots and joint recurrence plots.

Cross recurrence plots consider the phase space trajectories of two different systems in the same phase space (Marwan & Kurths 2002):

\mathbf{CR}(i,j) = \Theta(\varepsilon - || \vec{x}(i) - \vec{y}(j)||), \quad \vec{x}(i),\, \vec{y}(i) \in \Bbb{R}^m, \quad i=1, \dots, N_x, \ j=1, \dots, N_y.

The dimension of both systems must be the same, but the number of considered states (i.e. data length) can be different. Cross recurrence plots compare the simultaneous occurrences of similar states of two systems. They can be used in order to analyse the similarity of the dynamical evolution between two different systems, to look for similar matching patterns in two systems, or to study the time-relationship of two similar systems, whose time-scale differ (Marwan & Kurths 2005).

Joint recurrence plots are the Hadamard product of the recurrence plots of the considered sub-systems (Romano et al. 2004), e.g. for two systems \vec{x} and \vec{y} the joint recurrence plot is

\mathbf{JR}(i,j) = \Theta(\varepsilon_x - || \vec{x}(i) - \vec{x}(j)||) \cdot \Theta(\varepsilon_y - || \vec{y}(i) - \vec{y}(j)||), \quad \vec{x}(i) \in \Bbb{R}^m, \quad \vec{y}(i) \in \Bbb{R}^n,\quad i,j=1, \dots, N_{x,y}.

In contrast to cross recurrence plots, joint recurrence plots compare the simultaneous occurrence of recurrences in two (or more) systems. Moreover, the dimension of the considered phase spaces can be different, but the number of the considered states has to be the same for all the sub-systems. Joint recurrence plots can be used in order to detect phase synchronisation.

[edit] Examples

Recurrence plot of the Southern Oscillation index.
Recurrence plot of the Southern Oscillation index.
A DNA dot plot of a human zinc finger transcription factor (GenBank ID NM_002383), showing regional self-similarity. The main diagonal represents the sequence's alignment with itself; lines off the main diagonal represent similar or repetitive patterns within the sequence.
A DNA dot plot of a human zinc finger transcription factor (GenBank ID NM_002383), showing regional self-similarity. The main diagonal represents the sequence's alignment with itself; lines off the main diagonal represent similar or repetitive patterns within the sequence.

[edit] References

[edit] External links

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