Image:HIV-SIV-phylogenetic-tree.png

From Wikipedia, the free encyclopedia

Image
File history
File links

Size of this preview: 690 × 599 pixel
Image in higher resolution (1681 × 1460 pixel, file size: 39 KB, MIME type: image/png)

Source: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory.

Cite: Kuiken, C., Foley, B., Hahn, B., Marx, P., McCutchan, F., Mellors, J. W., Mullins, J., Wolinsky, S. & Korber, B. (1999). A compilation and analysis of nucleic acid and amino acid sequences. In Human Retroviruses and AIDS. Los Alamos, New Mexico: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory.

URL: http://www.hiv.lanl.gov/content/hiv-db/COMPENDIUM/1999/1/intro.pdf

Description: Phylogenetic Tree of the SIV and HIV viruses. (click on image for detailed description.)

Viruses Depicted in HIV-SIV Phylogenetic Tree

Human

HIV-1 M (Main) group, including reference strains from subtypes A-J. Group M is responsible for the pandemic.
HIV-1 O (Outlier) group, most commonly found in West Africa
HIV-1 N (Not-M, Not-O) group, found in a very small number of individuals in West Africa
HIV-1 M group reference strains: A_UG.U455, A_KE.Q2317, B_US.JRFL, B_US.WEAU160, C_ET.ETH2220, C_IN.21068, D_ZR.NDK, D_ZR.ELI, F_FI.FIN6393, F_BE.VI850, G_SE.SE6165, G_BE.DRCBL, H_CF.90CF056, H_BE.VI997, J_SE.SE91733, J_SE.SE92809, and CRF01 AE_CF.90CF402 and AE_TH.CM240, which are subtype A in pol.
HIV-1 N group: N_CM.YBF30
HIV-1 O group: O_CM.ANT70, O_CM.MVP5180
HIV-2 subtypes A and B: H2A_DE.BEN, H2A_SN.ST, H2B_GH.D205, and H2B_CI.EHO

Simian

SIVcpz from chimpanzee Pan troglodytes troglodytes (P.t.t.):
SIVcpz.GAB, SIVcpz.US, and SIVcpz.Cam3
SIVcpz from chimpanzee Pan troglodytes shweinfurthii (P.t.s.): SIVcpz.ANT
SIV African Green Monkey (SIVagm):
Tantalus (TAN): SIVagm.TAN1
Vervet (VER): SIVagm.VERTYO, SIVagm.VERAGM3, SIVagm.VER9063, SIVagm.VER155
Grivet (GRI): SIVagm.GRI677
Sabaeus (SAB): SIVagm.SAB1C
SIV Sooty Mangaby (SIVsm) (also found in macaques): SIVsm.mac251, SIVsm.smm9
SIV L’hoest: SIV.LHOEST
SIV Mandrill: SIV.MNDGB1
SIV Sun: SIV.SUN

This image is a work of a United States Department of Energy (or predecessor organization) employee, taken or made during the course of an employee's official duties. As a work of the U.S. federal government, the image is in the public domain.

Please note that national laboratories operate under varying licences and some are not free. Check the site policies of any national lab before crediting it with this tag.

File history

Legend: (cur) = this is the current file, (del) = delete this old version, (rev) = revert to this old version.
Click on date to download the file or see the image uploaded on that date.

(del) (cur) 02:46, 4 July 2006 . . Renegadeviking (Talk | contribs) . . 1681×1460 (40,304 bytes)
(del) (rev) 15:47, 16 April 2006 . . Solarcaine (Talk | contribs) . . 1681×1460 (63,014 bytes)
(del) (rev) 03:08, 22 June 2005 . . Carl Henderson (Talk | contribs) . . 1681×1460 (177,408 bytes) ('''Source:''' Theoretical Biology and Biophysics Group, Los Alamos National Laboratory. <br> '''Cite:''' Kuiken, C., Foley, B., Hahn, B., Marx, P., McCutchan, F., Mellors, J. W., Mullins, J., Wolinsky, S. & Korber, B. (1999). A compilation and analysis o)