Repressor

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A repressor is a DNA-binding protein that regulates the expression of one or more genes by decreasing the rate of transcription. This blocking of expression is called repression.

Repressor proteins are coded for by regulator genes. Repressor proteins then attach to a DNA segment known as the operator. By binding to the operator, the repressor protein prevents the RNA polymerase from creating messenger RNA.

If an inducer, a molecule that initiates the gene expression, is present, then it binds to the repressor protein and deattaches it from the operator. The RNA polymerase then can create the messenger RNA and allow the gene to be expressed.

The repressor is a type of a feedback mechanism because it forces activation to occur only if a certain condition is present: the presence of inducers. Otherwise, the RNA polymerase is unable to create any RNA, conserving energy.

[edit] Examples

An example of a repressor protein is the Methionine repressor MetJ. MetJ is a homodimer consisting of two monomers which each provide a beta ribbon and an alpha helix. Together, the beta ribbons of each monomer come together to form an antiparallel beta-sheet which binds to the DNA operator "met box" in its major groove. Once bound the MetJ dimer makes protein-protein interactions with another MetJ dimer on the other side of the operator via its alpha helices. In this way the operator makes protein - protein AND protein - DNA interactions

The met box has the sequence AGACGTCT which is a palindrome (it shows dyad symmetry) allowing the same sequence to be read on either side of the operator. The junction between c and g in the middle of the met-box contains a pyramidine-purine step that becomes over-twisted forming a kink in the phosphodiester backbone. This is how the protein checks for the recognition site as it allows the DNA duplex to follw the shape of the protein.

Each MetJ dimer contains two binding sites for the cofactor S-Adenosyl Methionine (SAM) which is a product in the biosynthesis of methionine. When SAM is present it binds to the metJ protein increasing its affinity for the met-box operator site which halts transcription of genes involved in methionine synthesis. When SAM concentration becomes low the repressor dissociates from the operator site alowing more methionine to be produced.

Also, see lac repressor