Protein Data Bank (file format)
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File extension: | .pdb, .ent, .brk |
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Type of format: | chemical file format |
Through the years the Protein Data Bank has undergone many, many changes and revisions. Its original format was dictated by the width of computer punch cards.
- PDB Format Guide - Prepared by the PDB Staff at BNL The PDB format specification can be found here, and it is vital that you read this before looking at the raw data.
- Recently PDB provides a representation of PDB data in XML format, PDBML format.
- ftp.rcsb.org The raw data can be downloaded from here.
This legacy format has caused many problems with the format, and consequently the PDB has three distinct 'clean-up' projects;
- The Molecular Modeling DataBase (MMDB) from NCBI
- The Macromolecular Structure Database from the European Bioinformatics Institute
- The Data Uniformity Project from PDB