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[edit] State-run institutes
- Athena (former KETEP/IRIS)
- Cultural & Educational Technologies Institute (IPET/CETI)
- Industrial Systems Institute (INBIS/ISI)
- Institute for Language and Speech Processing (ILSP)
- Institute for Research in Networks (IRNET)
- Institute for Information Systems and Simulation
- Academy of Athens
- Foundation for Biomedical Research of the Academy of Athens
- Research Centre for Modern Greek Dialects
- Hellenic Folkore Research Centre
- Center of Research for Medieval and Modern Hellenism
- Research Center for the History of Greek Law
- Center of Research into the History of Modern Hellenism
- Research Center for Greek and Latin Literature
- Research Centre for Greek Philosophy
- Research Centre for Atmospheric Physics and Climatology
- Research Center for Antiquity
- Center of Research into Greek Society
- Research Centre for Byzantine and Post-Byzantine Art
- Research Center for Scientific Terms and Neologisms
- Research Center of Pure and Applied Mathematics
- Alexander Fleming Biomedical Sciences Research Center
- Center for European Constitutional Law (CECL)
- Center for the Greek Language
- Center of International & European Economic Law (CIEEL)
- Center for Research and Technology Hellas (CERTH)
- Chemical Process Engineering Research Institute (CPERI)
- Hellenic Institute of Transport (HIT)
- Informatics and Telematics Institute (ITI)
- Institute for Solid Fuels Technology and Applications (ISFTA)
- Institute of Agrobiotechnology (INA)
- Center for Renewable Energy Sources (CRES)
- Computer Techonology Institute
- Education Research Centre
- Eugenides Foundation
- Exports' Research and Studies Institute (IEES)
- Institute of Optics and Vision (IVO)
- National Agricultural Research Foundation (NAGREF)
- Institute of Viticulture, Vegetable crops and Floriculture of Heraklion
- Institute of Agricultural Machinery and Constructions
- Forest Research Institute
- Veterinary Research Institute
- Hellenic Institute of Apiculture
- Cereal Institute
- Institute of Mediterranean Forest Ecosystems & Forest Products Technology
- Institute of Subtropical Plants and Olive Tree of Chania
- Foundation for Economic and Industrial Research (IOBE)
- Foundation for Research & Technology - Hellas (FORTH)
- Biomedical Research Institute (BRI)
- Institute of Applied Computational Mathematics (IACM)
- Institute of Chemical Engineering & High Temperature Processes (ICE/HT)
- Institute of Computer Science (ICS)
- Institute of Electronic Structure and Laser (IESL)
- Institute of Mediterranean Studies
- Institute of Molecular Biology & Biotechnology (IMBB)
- Hellenic Geological Institute
- Hellenic Institute of International & Foreign Law
- Hellenic Centre for Marine Research (NCMR)
- Institute of Oceanography
- Institute of Aquaculture
- Institute of Marine Biological Resources
- Institute of Inland Waters
- Institute of Marine Biology and Genetics
- Hellenic Institute for Occupational Health and Safety (ELINYAE)
- Hellenic Pasteur Institute - Athens
- Institute of Biomedical Technology (INBIT)
- Institute of Geology and Mineral Exploration
- Institute of International Relations (IIR)
- Institute for International Economic Relations (IIER)
- Mediterranean Agronomic Institute of Chania
- National Center for Social Research (EKKE)
- National Observatory of Athens
- Institute of Astronomy and Astrophysics
- Institute of Geodynamics
- Institute for Environmental research and Sustainable Development
- Institute for Space Applications and Remote Sensing
- Institute of Astroparticle Physics Nestor - Pylos
- National Research Center for Physical Sciences Demokritos - Athens
- Institute of Biology
- Institute of Materials Science
- Institute of Microelectronics
- Institute of Informatics and Telecommunications
- Institute of Nuclear Technology
- Institute of Nuclear Physics
- Institute of Radioisotopes & Radiodiagnostic Products
- Institute of Physical Chemistry
- National Research Foundation (EIE) - Athens
- National School of Public Health
- Research Centre for Equal Opportunities (KETHI)
- Society for Social and Economic Studies (EKOME)
- Telecommunication Systems Institute
- University Research Institute of Social Insurance, Health & Assistance (EPIKAYP)
[edit] Private institutes
- Research Institute for European and American Studies (RIEAS)
- Southeastern Europe Telecommunications and Informatics Research Institute (INA)