JAligner

From Wikipedia, the free encyclopedia

You have new messages (last change).

JAligner is an open source Java implementation of the Smith-Waterman algorithm[1] with Gotoh's improvement[2] for biological local pairwise sequence alignment using the affine gap penalty model. Is was written by Ahmed Moustafa.

[edit] See also

[edit] References

  1. ^ Smith TF and Waterman MS (1981). Identification of common molecular subsequences. J Mol Biol, 147:195-197.
  2. ^ Gotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol, 162:705-708.

[edit] External links

This bioinformatics-related article is a stub. You can help Wikipedia by expanding it.

Retrieved from "http://en.wikipedia.org../../../j/a/l/JAligner_1b79.html"