Image:HIV-SIV-phylogenetic-tree.png

From Wikipedia, the free encyclopedia

You have new messages (last change).

Source: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory.

Cite: Kuiken, C., Foley, B., Hahn, B., Marx, P., McCutchan, F., Mellors, J. W., Mullins, J., Wolinsky, S. & Korber, B. (1999). A compilation and analysis of nucleic acid and amino acid sequences. In Human Retroviruses and AIDS. Los Alamos, New Mexico: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory.

URL: http://www.hiv.lanl.gov/content/hiv-db/COMPENDIUM/1999/1/intro.pdf

Description: Phylogenetic Tree of the SIV and HIV viruses. (click on image for detailed description.)

Viruses Depicted in HIV-SIV Phylogenetic Tree

Human

  • HIV-1 M (Main) group, including reference strains from subtypes A-J. Group M is responsible for the pandemic.
  • HIV-1 O (Outlier) group, most commonly found in West Africa
  • HIV-1 N (Not-M, Not-O) group, found in a very small number of individuals in West Africa
  • HIV-1 M group reference strains: A_UG.U455, A_KE.Q2317, B_US.JRFL, B_US.WEAU160, C_ET.ETH2220, C_IN.21068, D_ZR.NDK, D_ZR.ELI, F_FI.FIN6393, F_BE.VI850, G_SE.SE6165, G_BE.DRCBL, H_CF.90CF056, H_BE.VI997, J_SE.SE91733, J_SE.SE92809, and CRF01 AE_CF.90CF402 and AE_TH.CM240, which are subtype A in pol.
  • HIV-1 N group: N_CM.YBF30
  • HIV-1 O group: O_CM.ANT70, O_CM.MVP5180
  • HIV-2 subtypes A and B: H2A_DE.BEN, H2A_SN.ST, H2B_GH.D205, and H2B_CI.EHO

Simian

  • SIVcpz from chimpanzee Pan troglodytes troglodytes (P.t.t.):
  • SIVcpz.GAB, SIVcpz.US, and SIVcpz.Cam3
  • SIVcpz from chimpanzee Pan troglodytes shweinfurthii (P.t.s.): SIVcpz.ANT
  • SIV African Green Monkey (SIVagm):
  • Tantalus (TAN): SIVagm.TAN1
  • Vervet (VER): SIVagm.VERTYO, SIVagm.VERAGM3, SIVagm.VER9063, SIVagm.VER155
  • Grivet (GRI): SIVagm.GRI677
  • Sabaeus (SAB): SIVagm.SAB1C
  • SIV Sooty Mangaby (SIVsm) (also found in macaques): SIVsm.mac251, SIVsm.smm9
  • SIV L’hoest: SIV.LHOEST
  • SIV Mandrill: SIV.MNDGB1
  • SIV Sun: SIV.SUN


Public domain This image is a work of a United States Department of Energy (or predecessor organization) employee, taken or made during the course of an employee's official duties. As a work of the U.S. federal government, the image is in the public domain.

Please note that national laboratories operate under varying licences and some are not free. Check the site policies of any national lab before crediting it with this tag.

File history

Legend: (cur) = this is the current file, (del) = delete this old version, (rev) = revert to this old version.
Click on date to download the file or see the image uploaded on that date.


The following pages on the English Wikipedia link to this file (pages on other projects are not listed):

Retrieved from "http://en.wikipedia.org../../../h/i/v/Image%7EHIV-SIV-phylogenetic-tree.png_8ef3.html"