Beta-propeller domain

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Ribbon diagram of the C-terminal WD40 domain of Tup1 (a transcriptional co-repressor in yeast), which adopts a 7-bladed beta-propeller fold. Ribbon is colored from blue (N-terminus) to red (C-terminus).

A beta-propeller domain is an all-β protein fold characterized by 4-8 blade-shaped beta sheets arranged toroidally around a central axis. Each sheet typically has four antiparallel β-strands twisted so that the first and fourth sheets are almost perpendicular to each other. The enzyme's active site is often found in the cleft formed in the center of the propeller by loops connecting the successive four-sheet motifs.

[edit] Examples

The influenza virus protein neuraminidase is a six-bladed beta-propeller protein whose active form is a tetramer. It is one of two proteins present in the viral envelope and catalyzes the cleavage of sialic acid moieties from cell-membrane proteins to aid in the targeting of newly produced virions to previously uninfected cells.

WD40 domains, also known as beta-transducin repeats, are short fragments found in eukaryotes but not in prokaryotes. They are often assembled in 4 to 16 repeated units to form a structural domain for critical for protein-protein interactions.

[edit] External links

• SCOP 4-bladed beta propellers
• SCOP 5-bladed beta propellers
• SCOP 6-bladed beta propellers
• SCOP 7-bladed beta propellers
• SCOP 8-bladed beta propellers

[edit] References

• Branden C, Tooze J. (1999). Introduction to Protein Structure 2nd ed. Garland Publishing: New York, NY.
• Neer EJ, Schmidt CJ, Nambudripad R, Smith TF. (1994). The ancient regulatory-protein family of WD-repeat proteins. Nature 371(6495):297-300.
• Smith TF, Gaitatzes C, Saxena K and Neer EJ. (1999) "The WD repeat: a common architecture for diverse functions", TIBS, 24, 181-185.

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