Align-m

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Align-m is a multiple sequence alignment program written by Ivo Van Walle.

Align-m has the ability to accomplish the following tasks:

  • Multiple sequence alignment
  • Include extra information to guide the sequence alignment
  • Multiple structure alignment
  • Homology modeling by (iteratively) combining sequence and structure alignment data
  • 'Filtering' of Blast or other pairwise alignments
  • Combining many alignments into 1 consensus
  • Multiple genome alignment (can cope with rearrangements)

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